Strain Fitness in Pseudomonas putida KT2440 around PP_1672

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
1,866,287	+				+0.1
1,866,287	+				-0.8
1,866,288	-				+0.7
1,866,372	-		PP_1670	0.17	-0.2
1,866,384	+		PP_1670	0.19	+0.9
1,866,385	-		PP_1670	0.19	+1.0
1,866,388	+		PP_1670	0.20	+0.4
1,866,388	+		PP_1670	0.20	-1.4
1,866,388	+		PP_1670	0.20	+1.5
1,866,389	-		PP_1670	0.20	+1.5
1,866,389	-		PP_1670	0.20	-0.0
1,866,389	-		PP_1670	0.20	+0.5
1,866,390	+		PP_1670	0.20	+0.9
1,866,391	-		PP_1670	0.20	-0.8
1,866,478	-		PP_1670	0.37	+1.3
1,866,517	+		PP_1670	0.44	-1.3
1,866,517	+		PP_1670	0.44	+0.2
1,866,517	+		PP_1670	0.44	+0.8
1,866,517	+		PP_1670	0.44	-0.4
1,866,517	+		PP_1670	0.44	+0.8
1,866,517	+		PP_1670	0.44	+0.4
1,866,517	+		PP_1670	0.44	-0.1
1,866,517	+		PP_1670	0.44	-1.2
1,866,517	+		PP_1670	0.44	-0.2
1,866,518	-		PP_1670	0.44	+0.5
1,866,518	-		PP_1670	0.44	-0.3
1,866,518	-				-0.3
1,866,518	-		PP_1670	0.44	+1.0
1,866,518	-		PP_1670	0.44	-0.1
1,866,518	-		PP_1670	0.44	+0.8
1,866,518	-		PP_1670	0.44	+2.0
1,866,518	-		PP_1670	0.44	+1.5
1,866,518	-		PP_1670	0.44	+0.2
1,866,518	-		PP_1670	0.44	+0.5
1,866,518	-		PP_1670	0.44	+0.6
1,866,523	+		PP_1670	0.45	+1.2
1,866,524	-		PP_1670	0.45	+1.2
1,866,524	-				+3.5
1,866,673	+		PP_1670	0.73	+0.7
1,866,673	+		PP_1670	0.73	-0.2
1,866,673	+		PP_1670	0.73	+1.2
1,866,673	+		PP_1670	0.73	+0.2
1,866,673	+		PP_1670	0.73	+2.2
1,866,674	-		PP_1670	0.73	-0.8
1,866,674	-		PP_1670	0.73	-1.5
1,866,674	-		PP_1670	0.73	+1.2
1,866,674	-		PP_1670	0.73	-1.7
1,866,749	-		PP_1670	0.87	+1.5
1,866,817	+				+0.6
1,866,832	-				+0.7
1,867,053	+				+1.5
1,867,145	+				+0.9
1,867,146	-				-1.5
1,867,229	+				+1.8
1,867,230	-				-1.5
1,867,230	-				-0.9
1,867,230	-				-0.5
1,867,232	+				+0.6
1,867,232	+				+1.5
1,867,232	+				+1.2
1,867,386	-		PP_1672	0.17	-2.4
1,867,386	-		PP_1672	0.17	-2.5
1,867,550	-		PP_1672	0.44	-3.2
1,867,550	-		PP_1672	0.44	-3.7
1,867,572	+		PP_1672	0.48	-2.3
1,867,661	+		PP_1672	0.62	-2.1
1,867,662	-		PP_1672	0.63	-3.0
1,867,662	-		PP_1672	0.63	-3.2
1,867,662	-		PP_1672	0.63	-0.3
1,867,708	+		PP_1672	0.70	-2.8
1,867,709	-		PP_1672	0.70	-3.1
1,867,728	-		PP_1672	0.73	-2.7
1,867,728	-		PP_1672	0.73	-4.1
1,867,861	-				-1.6
1,867,952	+				-2.9
1,867,952	+				-3.2
1,868,073	+		PP_1673	0.14	-2.1
1,868,074	-		PP_1673	0.14	-1.7
1,868,609	-				+0.5
1,868,609	-		PP_1673	0.56	-3.7
1,868,643	+		PP_1673	0.58	-1.7
1,868,644	-		PP_1673	0.58	-2.2
1,868,644	-		PP_1673	0.58	-1.9
1,868,644	-		PP_1673	0.58	-2.8
1,868,651	+		PP_1673	0.59	-0.2
1,868,740	-		PP_1673	0.66	-2.5
1,868,740	-		PP_1673	0.66	-0.8
1,868,740	-		PP_1673	0.66	-1.5