Strain Fitness in Pseudomonas putida KT2440 around PP_1621

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
1,816,017	-				-0.8
1,816,017	-		PP_1619	0.88	-3.6
1,816,017	-		PP_1619	0.88	+0.1
1,816,030	+		PP_1619	0.89	+0.7
1,816,134	+				-3.9
1,816,134	+				-1.6
1,816,205	-		PP_1620	0.10	-0.9
1,816,432	+		PP_1620	0.40	+0.8
1,816,432	+		PP_1620	0.40	-1.5
1,816,432	+		PP_1620	0.40	+0.6
1,816,479	+		PP_1620	0.47	-0.3
1,816,537	+		PP_1620	0.54	-1.2
1,816,537	+		PP_1620	0.54	-0.9
1,816,537	+		PP_1620	0.54	-1.5
1,816,538	-		PP_1620	0.55	-4.2
1,816,538	-		PP_1620	0.55	-1.1
1,816,596	-		PP_1620	0.62	-1.3
1,816,596	-		PP_1620	0.62	+0.5
1,816,608	+		PP_1620	0.64	+0.3
1,816,792	+		PP_1620	0.88	-3.9
1,816,792	+		PP_1620	0.88	-1.1
1,816,792	+		PP_1620	0.88	+0.1
1,816,793	-		PP_1620	0.89	-2.5
1,816,793	-		PP_1620	0.89	-1.2
1,816,793	-		PP_1620	0.89	-1.0
1,816,796	+		PP_1620	0.89	-1.7
1,816,796	+		PP_1620	0.89	+0.9
1,816,797	-		PP_1620	0.89	-1.2
1,816,892	+				-0.7
1,816,892	+				-0.9
1,816,892	+				-0.6
1,816,929	+		PP_1621	0.10	-1.3
1,817,049	+		PP_1621	0.28	+0.4
1,817,049	+		PP_1621	0.28	-0.7
1,817,182	-		PP_1621	0.47	-0.3
1,817,227	+		PP_1621	0.53	+0.9
1,817,234	+		PP_1621	0.54	+0.4
1,817,234	+		PP_1621	0.54	-2.0
1,817,235	-		PP_1621	0.54	-1.0
1,817,243	-		PP_1621	0.55	-1.2
1,817,243	-		PP_1621	0.55	-1.1
1,817,280	-		PP_1621	0.61	-0.4
1,817,434	+		PP_1621	0.83	-0.7
1,817,593	-				+0.7
1,817,679	+				+0.2
1,817,680	-				+0.7
1,817,680	-				-1.4
1,817,727	-				-2.7
1,817,739	-				-1.3
1,817,739	-				+1.5
1,818,256	+				+1.5
1,818,307	+		PP_1622	0.57	+1.5
1,818,308	-		PP_1622	0.57	+1.5