Strain Fitness in Pseudomonas putida KT2440 around PP_1616

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
1,811,535	-				-1.1
1,811,627	-		PP_1615	0.12	-0.3
1,811,699	+		PP_1615	0.20	+1.0
1,811,699	+		PP_1615	0.20	-1.4
1,811,699	+		PP_1615	0.20	-0.1
1,811,700	-		PP_1615	0.20	-0.6
1,811,700	-		PP_1615	0.20	+1.2
1,811,700	-		PP_1615	0.20	+0.4
1,811,700	-		PP_1615	0.20	-0.2
1,811,702	+		PP_1615	0.20	-1.5
1,811,703	-		PP_1615	0.20	+0.2
1,811,778	+		PP_1615	0.29	+1.0
1,811,779	-		PP_1615	0.29	-0.0
1,811,779	-		PP_1615	0.29	+1.5
1,811,779	-		PP_1615	0.29	-1.2
1,811,819	-		PP_1615	0.33	-0.5
1,811,891	+		PP_1615	0.41	+0.4
1,811,892	-		PP_1615	0.41	+0.3
1,811,903	+		PP_1615	0.43	+0.2
1,811,924	+		PP_1615	0.45	+1.3
1,811,924	+		PP_1615	0.45	+1.4
1,811,924	+		PP_1615	0.45	+2.1
1,811,924	+		PP_1615	0.45	-1.1
1,811,925	-		PP_1615	0.45	+1.0
1,811,925	-		PP_1615	0.45	-0.5
1,812,063	-		PP_1615	0.60	+1.2
1,812,461	+				-0.0
1,812,461	+				-1.2
1,812,660	+		PP_1616	0.12	-0.3
1,812,661	-		PP_1616	0.12	-1.9
1,812,661	-		PP_1616	0.12	+2.0
1,812,661	-		PP_1616	0.12	-0.9
1,812,662	+		PP_1616	0.13	-0.5
1,812,662	+		PP_1616	0.13	-1.0
1,812,662	+		PP_1616	0.13	+0.1
1,812,663	-		PP_1616	0.13	+1.7
1,812,690	-		PP_1616	0.15	-0.6
1,812,690	-		PP_1616	0.15	+0.6
1,812,690	-		PP_1616	0.15	+1.6
1,812,790	-		PP_1616	0.24	+1.4
1,812,790	-		PP_1616	0.24	-1.8
1,812,906	+		PP_1616	0.34	+0.7
1,812,930	+		PP_1616	0.37	+0.0
1,812,930	+		PP_1616	0.37	+2.3
1,812,930	+		PP_1616	0.37	-0.3
1,812,931	-		PP_1616	0.37	+1.0
1,812,931	-		PP_1616	0.37	+0.6
1,812,957	+		PP_1616	0.39	-2.7
1,813,091	+		PP_1616	0.51	-0.7
1,813,091	+		PP_1616	0.51	+0.8
1,813,092	-		PP_1616	0.51	-0.8
1,813,166	+		PP_1616	0.58	-0.3
1,813,248	+		PP_1616	0.65	-1.3
1,813,248	+		PP_1616	0.65	-0.8
1,813,249	-		PP_1616	0.65	-0.1
1,813,249	-		PP_1616	0.65	+0.4
1,813,504	-		PP_1616	0.88	-0.1
1,813,504	-		PP_1616	0.88	-0.6
1,813,504	-		PP_1616	0.88	-1.5
1,813,619	+				-0.9
1,813,657	+				-1.5
1,813,733	-		PP_1617	0.10	-3.0
1,813,749	-		PP_1617	0.12	-2.1
1,813,793	+		PP_1617	0.17	-4.0
1,813,794	-		PP_1617	0.17	-3.7
1,813,968	-		PP_1617	0.38	-2.7
1,813,968	-		PP_1617	0.38	-2.6
1,813,968	-		PP_1617	0.38	-4.4
1,814,018	+		PP_1617	0.44	-4.1
1,814,018	+		PP_1617	0.44	-4.0
1,814,019	-		PP_1617	0.44	-4.5
1,814,019	-		PP_1617	0.44	-2.2
1,814,144	+		PP_1617	0.58	-4.2
1,814,407	+		PP_1617	0.89	-3.3
1,814,407	+		PP_1617	0.89	-3.4
1,814,408	-		PP_1617	0.89	-3.6
1,814,428	+				-2.8
1,814,428	+				-3.9
1,814,428	+				-4.0
1,814,428	+				-2.5
1,814,428	+				-4.1
1,814,428	+				-4.5
1,814,428	+				-0.1
1,814,428	+				-3.8
1,814,428	+				-1.1
1,814,428	+				-2.3
1,814,429	-				-2.7
1,814,429	-				-2.1
1,814,429	-				-3.8
1,814,429	-				-2.9
1,814,429	-				-1.5
1,814,429	-				-2.5
1,814,429	-				-4.2
1,814,429	-				-1.5
1,814,432	+				-2.0
1,814,432	+				-0.5
1,814,432	+				+0.7
1,814,432	+				-1.0
1,814,432	+				-4.0
1,814,432	+				-2.3
1,814,432	+				-5.0
1,814,433	-				-2.0
1,814,433	-				-2.7
1,814,435	+				-3.3
1,814,436	-				-1.8
1,814,436	-				-4.7
1,814,436	-				-2.5
1,814,498	+				+0.8
1,814,578	-				+1.5