Strain Fitness in Pseudomonas putida KT2440 around PP_1596

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1594 and PP_1595 are separated by 15 nucleotidesPP_1595 and PP_1596 overlap by 1 nucleotidesPP_1596 and PP_1597 overlap by 28 nucleotides PP_1594: PP_1594 - Ribosome-recycling factor, at 1,787,955 to 1,788,512 _1594 PP_1595: PP_1595 - Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific), at 1,788,528 to 1,789,283 _1595 PP_1596: PP_1596 - CTP:phosphatidate cytidyltransferase, at 1,789,283 to 1,790,098 _1596 PP_1597: PP_1597 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase, at 1,790,071 to 1,791,285 _1597 Position (kb) 1789 1790 1791Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1788.510 kb on + strandat 1788.510 kb on + strandat 1788.510 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-methyl-1-butanol 0.1 vol% (C)
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1,788,510 + -5.0
1,788,510 + -3.8
1,788,510 + -4.5

Or see this region's nucleotide sequence