Strain Fitness in Pseudomonas putida KT2440 around PP_1499

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
1,703,726	+		PP_1497	0.57	+0.4
1,703,726	+		PP_1497	0.57	-1.2
1,703,940	-		PP_1497	0.87	-2.1
1,703,940	-		PP_1497	0.87	+0.5
1,703,993	-				+2.2
1,704,099	-				+0.8
1,704,251	+		PP_1498	0.34	-0.8
1,704,251	+		PP_1498	0.34	-2.2
1,704,251	+		PP_1498	0.34	-0.7
1,704,293	+		PP_1498	0.42	-1.4
1,704,293	+		PP_1498	0.42	-0.2
1,704,294	-		PP_1498	0.42	+1.3
1,704,294	-		PP_1498	0.42	+0.5
1,704,294	-		PP_1498	0.42	+1.3
1,704,294	-		PP_1498	0.42	+0.8
1,704,416	+		PP_1498	0.64	+1.1
1,704,417	-		PP_1498	0.64	+0.9
1,704,438	+		PP_1498	0.68	+0.5
1,704,438	+		PP_1498	0.68	+0.0
1,704,475	+		PP_1498	0.75	-0.0
1,704,476	-		PP_1498	0.75	+0.5
1,704,476	-		PP_1498	0.75	+0.6
1,704,671	+				+0.4
1,704,671	+				-0.6
1,704,672	-				+1.0
1,704,672	-				+1.7
1,704,672	-				+1.0
1,704,672	-				+0.4
1,704,843	+		PP_1499	0.16	+0.3
1,704,843	+		PP_1499	0.16	+1.8
1,704,843	+		PP_1499	0.16	+1.9
1,704,844	-		PP_1499	0.16	-0.1
1,704,844	-		PP_1499	0.16	+1.0
1,704,846	+		PP_1499	0.16	+1.5
1,704,847	-		PP_1499	0.16	+1.0
1,704,979	-		PP_1499	0.26	+2.1
1,705,120	-		PP_1499	0.36	+0.3
1,705,239	-		PP_1499	0.45	-0.5
1,705,296	+		PP_1499	0.50	+1.1
1,705,296	+		PP_1499	0.50	-1.4
1,705,296	+		PP_1499	0.50	+0.6
1,705,297	-		PP_1499	0.50	+0.1
1,705,297	-		PP_1499	0.50	-0.3
1,705,412	+		PP_1499	0.58	+0.8
1,705,497	+		PP_1499	0.65	-1.5
1,705,620	+		PP_1499	0.74	+1.1
1,705,620	+		PP_1499	0.74	-0.5
1,705,620	+		PP_1499	0.74	+1.0
1,705,621	-		PP_1499	0.74	+1.1
1,705,714	-		PP_1499	0.81	+1.7
1,705,719	+		PP_1499	0.81	+0.1
1,705,719	+		PP_1499	0.81	+1.2
1,705,720	-		PP_1499	0.82	+2.8
1,705,720	-		PP_1499	0.82	+1.6
1,705,848	+				+2.8
1,705,848	+				+1.3
1,705,849	-				+2.1
1,706,032	+		PP_1500	0.10	+0.5
1,706,032	+		PP_1500	0.10	-0.7
1,706,224	+		PP_1500	0.31	+0.7
1,706,224	+		PP_1500	0.31	-0.2
1,706,224	+		PP_1500	0.31	-0.8
1,706,224	+		PP_1500	0.31	-0.5
1,706,224	+		PP_1500	0.31	-0.5
1,706,224	+		PP_1500	0.31	+0.3
1,706,225	-		PP_1500	0.31	+1.7
1,706,246	-		PP_1500	0.34	+0.8
1,706,267	-		PP_1500	0.36	+0.7
1,706,275	+		PP_1500	0.37	+1.3
1,706,315	-		PP_1500	0.41	-3.6
1,706,381	+		PP_1500	0.48	-0.0
1,706,381	+		PP_1500	0.48	+0.3
1,706,382	-		PP_1500	0.48	-0.0
1,706,422	+		PP_1500	0.53	+0.7
1,706,423	-		PP_1500	0.53	-0.5
1,706,491	+		PP_1500	0.60	+0.9
1,706,680	+		PP_1500	0.81	+1.8
1,706,680	+		PP_1500	0.81	+0.1
1,706,680	+		PP_1500	0.81	+1.1
1,706,681	-		PP_1500	0.81	+0.6
1,706,751	+		PP_1500	0.88	-1.8
1,706,751	+		PP_1500	0.88	-1.2
1,706,751	+		PP_1500	0.88	-0.4
1,706,751	+		PP_1500	0.88	+0.3
1,706,752	-		PP_1500	0.88	+0.7
1,706,934	+		PP_1501	0.24	+0.1
1,706,935	-		PP_1501	0.24	+0.3
1,706,937	+		PP_1501	0.25	+0.9
1,706,937	+		PP_1501	0.25	-0.3
1,706,937	+		PP_1501	0.25	+0.2
1,706,938	-		PP_1501	0.25	+0.9