Strain Fitness in Pseudomonas putida KT2440 around PP_1443

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
1,641,337	+		PP_1441	0.52	-0.6
1,641,338	-		PP_1441	0.53	-1.2
1,641,386	+		PP_1441	0.59	-0.8
1,641,420	+		PP_1441	0.64	+0.1
1,641,420	+		PP_1441	0.64	+1.5
1,641,506	+				+0.5
1,641,506	+		PP_1441	0.75	+0.1
1,641,732	-				-1.8
1,641,732	-				+1.3
1,641,732	-				-0.1
1,641,848	-		PP_1442	0.17	+0.7
1,641,848	-		PP_1442	0.17	+0.9
1,641,947	-		PP_1442	0.42	+1.6
1,641,973	-		PP_1442	0.49	-1.9
1,641,973	-		PP_1442	0.49	-1.2
1,642,034	+		PP_1442	0.65	+0.3
1,642,502	-				-3.0
1,642,637	-		PP_1443	0.13	-1.3
1,642,709	+		PP_1443	0.16	-0.0
1,642,709	+		PP_1443	0.16	-0.7
1,642,709	+		PP_1443	0.16	-1.0
1,642,710	-		PP_1443	0.16	-1.2
1,642,710	-		PP_1443	0.16	-2.5
1,642,710	-		PP_1443	0.16	-0.3
1,642,710	-		PP_1443	0.16	-2.4
1,642,710	-		PP_1443	0.16	-1.6
1,642,871	-		PP_1443	0.23	-0.6
1,642,871	-		PP_1443	0.23	-1.6
1,642,932	+		PP_1443	0.25	+1.0
1,642,933	-		PP_1443	0.25	-0.5
1,642,933	-		PP_1443	0.25	+0.8
1,642,933	-		PP_1443	0.25	-2.0
1,642,933	-		PP_1443	0.25	+0.1
1,642,933	-		PP_1443	0.25	-1.5
1,643,031	-		PP_1443	0.29	+0.0
1,643,031	-		PP_1443	0.29	-4.3
1,643,342	+		PP_1443	0.42	+0.5
1,643,343	-		PP_1443	0.42	-2.3
1,643,343	-		PP_1443	0.42	-1.2
1,643,444	+		PP_1443	0.46	-0.0
1,643,444	+		PP_1443	0.46	-0.7
1,643,444	+		PP_1443	0.46	-0.8
1,643,444	+		PP_1443	0.46	-1.1
1,643,445	-		PP_1443	0.46	-0.7
1,643,445	-		PP_1443	0.46	-2.5
1,643,445	-		PP_1443	0.46	+0.2
1,643,445	-		PP_1443	0.46	+0.5
1,643,504	+		PP_1443	0.49	+0.6
1,643,504	+		PP_1443	0.49	-1.0
1,643,669	+		PP_1443	0.56	-1.6
1,643,670	-		PP_1443	0.56	-1.6
1,643,757	-		PP_1443	0.59	-2.8
1,643,757	-		PP_1443	0.59	-0.9
1,643,774	+		PP_1443	0.60	-0.2
1,643,774	+		PP_1443	0.60	-2.6
1,643,774	+		PP_1443	0.60	-0.5
1,643,775	-		PP_1443	0.60	-3.7
1,644,053	-		PP_1443	0.72	-0.1
1,644,182	+		PP_1443	0.77	+0.2
1,644,182	+		PP_1443	0.77	+0.9
1,644,183	-		PP_1443	0.77	-0.6
1,644,203	+		PP_1443	0.78	-1.0
1,644,223	+		PP_1443	0.79	-3.4
1,644,224	-		PP_1443	0.79	-0.7
1,644,224	-		PP_1443	0.79	-1.2
1,644,299	+		PP_1443	0.82	-0.9
1,644,300	-		PP_1443	0.82	+0.3
1,644,317	+		PP_1443	0.82	-0.3
1,644,620	+				-2.4
1,644,620	+				-0.3
1,644,620	+				-4.7
1,644,621	-				+0.5
1,644,621	-				+0.4
1,644,621	-				-0.9
1,644,762	+				-1.4
1,644,762	+				-3.8
1,644,762	+				+0.5
1,644,762	+				+0.1
1,644,762	+				-0.7
1,644,762	+				-1.6
1,644,763	-				+0.9
1,644,763	-				+0.4
1,644,763	-				-0.5
1,644,771	+				-1.4
1,644,771	+				-2.9
1,644,771	+				-0.3
1,644,771	+				-2.3
1,644,771	+				-0.7
1,644,771	+				-1.9
1,644,772	-				-4.0
1,644,772	-				+0.1
1,644,772	-				-3.2
1,644,772	-				-0.4
1,644,772	-				+0.7
1,644,772	-				-0.9
1,644,772	-				-1.1
1,644,772	-				+0.2
1,644,772	-				-0.2
1,644,865	+				-0.6
1,644,865	+				-1.1
1,644,866	-				-0.2
1,644,946	+				-0.4
1,644,961	+				-0.5
1,644,973	+				-0.3
1,644,974	-				-0.6
1,644,974	-				-0.6
1,644,974	-				+1.7
1,645,027	+				-1.7
1,645,027	+				+1.8
1,645,027	+				+0.1
1,645,027	+				-0.8
1,645,027	+				+0.3
1,645,028	-				-0.9
1,645,051	+				+1.2
1,645,051	+				+0.3
1,645,051	+				-0.9
1,645,065	-				+0.7
1,645,123	+				-1.0
1,645,123	+				+0.5
1,645,123	+				-0.4
1,645,136	-				+0.2
1,645,136	-				-2.1
1,645,136	-				+0.3
1,645,306	+		PP_1444	0.15	-0.4
1,645,307	-		PP_1444	0.15	-1.5
1,645,333	-		PP_1444	0.16	-0.5
1,645,333	-		PP_1444	0.16	+0.7
1,645,373	-		PP_1444	0.18	-0.5
1,645,474	+		PP_1444	0.22	+0.0
1,645,474	+		PP_1444	0.22	+0.5
1,645,474	+		PP_1444	0.22	-0.1
1,645,475	-		PP_1444	0.22	+0.6
1,645,475	-		PP_1444	0.22	+0.3
1,645,537	-		PP_1444	0.25	-0.6
1,645,537	-		PP_1444	0.25	-0.7
1,645,537	-		PP_1444	0.25	+0.7
1,645,537	-		PP_1444	0.25	+1.5
1,645,588	+		PP_1444	0.27	-0.1
1,645,588	+		PP_1444	0.27	+0.4