Strain Fitness in Pseudomonas putida KT2440 around PP_1310

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
1,496,646	+		PP_1308	0.90	-0.5
1,496,646	+		PP_1308	0.90	-0.1
1,496,647	-		PP_1308	0.90	-0.3
1,496,647	-		PP_1308	0.90	+0.1
1,496,648	+		PP_1308	0.90	-0.5
1,496,766	+				-2.5
1,496,885	-		PP_1309	0.10	-0.5
1,496,885	-		PP_1309	0.10	-1.5
1,496,902	-		PP_1309	0.14	+0.2
1,496,929	+		PP_1309	0.20	-1.0
1,496,930	-		PP_1309	0.21	-1.2
1,496,930	-		PP_1309	0.21	-0.9
1,497,050	+		PP_1309	0.48	-1.8
1,497,060	+				-2.5
1,497,060	+		PP_1309	0.50	-0.3
1,497,060	+		PP_1309	0.50	-1.8
1,497,061	-		PP_1309	0.50	-1.2
1,497,061	-		PP_1309	0.50	-2.3
1,497,126	+		PP_1309	0.65	+0.1
1,497,126	+		PP_1309	0.65	-2.6
1,497,126	+		PP_1309	0.65	-2.6
1,497,290	+				-4.1
1,497,291	-				-0.7
1,497,291	-				-2.6
1,497,291	-				-1.3
1,497,292	+				-0.1
1,497,307	+				-2.2
1,497,333	+				-0.8
1,497,333	+				-2.0
1,497,334	-				-1.7
1,497,334	-				+0.1
1,497,334	-				+0.7
1,497,375	-				-0.8
1,497,406	+				+0.4
1,497,407	-				-0.9
1,497,473	+				-0.5
1,497,614	+		PP_1310	0.32	+0.1
1,497,614	+		PP_1310	0.32	-3.3
1,497,615	-		PP_1310	0.32	-0.7
1,497,926	+		PP_1310	0.81	-2.1
1,497,927	-		PP_1310	0.81	-3.0