Strain Fitness in Pseudomonas putida KT2440 around PP_1284

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
1,466,244	+		PP_1283	0.39	+0.4
1,466,245	-		PP_1283	0.39	-0.3
1,466,323	+		PP_1283	0.44	+0.1
1,466,323	+		PP_1283	0.44	-0.8
1,466,323	+		PP_1283	0.44	+0.0
1,466,324	-		PP_1283	0.44	-2.7
1,466,324	-		PP_1283	0.44	-1.9
1,466,361	+		PP_1283	0.47	-0.5
1,466,361	+		PP_1283	0.47	-0.6
1,466,362	-		PP_1283	0.47	-0.0
1,466,473	-		PP_1283	0.54	-0.2
1,466,473	-		PP_1283	0.54	+1.0
1,466,473	-		PP_1283	0.54	-1.6
1,466,512	+		PP_1283	0.56	-1.2
1,466,512	+		PP_1283	0.56	+0.4
1,466,513	-		PP_1283	0.57	+0.9
1,466,523	+		PP_1283	0.57	-1.4
1,466,757	+		PP_1283	0.72	+1.5
1,466,757	+		PP_1283	0.72	-0.4
1,466,757	+		PP_1283	0.72	+1.1
1,466,785	-		PP_1283	0.74	+0.8
1,466,935	+		PP_1283	0.84	-1.1
1,466,936	-		PP_1283	0.84	+0.8
1,466,936	-		PP_1283	0.84	-0.3
1,467,067	+				-0.5
1,467,067	+				+1.1
1,467,068	-				-0.0
1,467,069	+				-1.9
1,467,069	+				+1.1
1,467,069	+				+0.1
1,467,070	-				-0.9
1,467,170	+				-0.2
1,467,170	+				-1.6
1,467,253	+				+1.6
1,467,294	+				-0.7
1,467,295	-				-1.4
1,467,376	+		PP_1284	0.11	-0.4
1,467,377	-		PP_1284	0.11	+0.9
1,467,377	-		PP_1284	0.11	-0.2
1,467,377	-		PP_1284	0.11	+1.2
1,467,377	-		PP_1284	0.11	-2.0
1,467,520	+		PP_1284	0.21	-1.7
1,467,539	-		PP_1284	0.22	+0.7
1,467,959	+		PP_1284	0.50	+0.4
1,467,959	+		PP_1284	0.50	-0.4
1,468,094	-		PP_1284	0.60	+0.8
1,468,094	-		PP_1284	0.60	+1.0
1,468,094	-		PP_1284	0.60	+1.3
1,468,147	+		PP_1284	0.63	+1.8
1,468,148	-		PP_1284	0.63	+0.6
1,468,229	+		PP_1284	0.69	-0.5
1,468,230	-		PP_1284	0.69	+1.5
1,468,294	+		PP_1284	0.73	-0.3
1,468,294	+		PP_1284	0.73	+1.0
1,468,301	+		PP_1284	0.74	+1.2
1,468,302	-		PP_1284	0.74	-1.5
1,468,342	+		PP_1284	0.76	+1.2
1,468,459	+		PP_1284	0.84	+1.7
1,468,459	+		PP_1284	0.84	-0.3
1,468,460	-		PP_1284	0.84	+2.4
1,468,460	-		PP_1284	0.84	-0.7
1,468,486	+		PP_1284	0.86	+1.0
1,468,486	+		PP_1284	0.86	+0.6
1,468,709	+				-0.7
1,468,753	+				+1.3
1,469,077	-		PP_1285	0.27	-1.2
1,469,079	+		PP_1285	0.27	+0.6
1,469,166	+		PP_1285	0.33	-0.3
1,469,166	+		PP_1285	0.33	+0.3
1,469,166	+		PP_1285	0.33	-0.4
1,469,167	-		PP_1285	0.33	-0.5
1,469,167	-		PP_1285	0.33	-1.8
1,469,170	-		PP_1285	0.33	+0.1
1,469,229	+		PP_1285	0.37	+0.3
1,469,271	+		PP_1285	0.40	+0.4
1,469,271	+		PP_1285	0.40	+0.4
1,469,271	+		PP_1285	0.40	-1.6
1,469,274	-		PP_1285	0.40	+0.3
1,469,319	-		PP_1285	0.43	-0.2
1,469,430	+		PP_1285	0.51	+0.2
1,469,431	-		PP_1285	0.51	+1.2
1,469,511	+		PP_1285	0.57	+0.4
1,469,511	+		PP_1285	0.57	+0.0
1,469,511	+		PP_1285	0.57	-0.0
1,469,512	-		PP_1285	0.57	-0.2
1,469,512	-		PP_1285	0.57	+0.5
1,469,577	+		PP_1285	0.61	+0.0
1,469,577	+		PP_1285	0.61	+0.2
1,469,578	-		PP_1285	0.61	-1.0
1,469,578	-		PP_1285	0.61	-0.5
1,469,596	-		PP_1285	0.62	+1.8