Strain Fitness in Pseudomonas putida KT2440 around PP_1216

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
1,392,783	+				+0.7
1,392,784	-				-2.2
1,392,908	-				-2.4
1,392,913	+				-3.0
1,392,913	+				-0.1
1,392,914	-				+0.4
1,392,914	-				-3.8
1,392,916	+				-2.0
1,392,917	-				-1.0
1,392,941	+				-0.7
1,392,947	+				-0.9
1,392,948	-				+0.7
1,392,948	-				-2.6
1,392,959	+				+0.3
1,392,960	-				-2.1
1,393,015	+				-0.5
1,393,015	+				-0.2
1,393,033	+				-1.2
1,393,062	-				-2.1
1,393,072	-		PP_1215	0.11	-2.4
1,393,097	+		PP_1215	0.15	-0.7
1,393,098	-		PP_1215	0.16	-2.1
1,393,538	+				-0.3
1,393,558	-				-1.1
1,393,577	+				-1.7
1,393,577	+				+1.3
1,393,577	+				-3.6
1,393,577	+				+0.8
1,393,578	-				-2.3
1,393,602	+				-0.7
1,393,602	+				-0.2
1,393,703	+				-1.8
1,393,704	-				-3.3
1,393,756	-		PP_1216	0.17	+0.6
1,393,794	-		PP_1216	0.23	-1.7
1,394,099	-		PP_1216	0.73	-2.4
1,394,160	+		PP_1216	0.83	-2.8
1,394,160	+		PP_1216	0.83	-2.7
1,394,161	-		PP_1216	0.83	-2.2
1,394,354	+				+0.0
1,394,354	+				-1.5
1,394,355	-				-1.4
1,394,355	-				-2.2
1,394,355	-				-2.3
1,394,705	-		PP_1217	0.42	-0.9
1,394,744	-		PP_1217	0.46	-1.4
1,394,747	-		PP_1217	0.46	-2.2
1,394,814	-		PP_1217	0.53	-2.0
1,394,891	+		PP_1217	0.60	-1.2
1,394,961	-		PP_1217	0.67	-1.7
1,395,148	+		PP_1217	0.84	-1.7
1,395,148	+		PP_1217	0.84	+0.0
1,395,149	-		PP_1217	0.85	-0.7
1,395,149	-		PP_1217	0.85	+1.6
1,395,149	-		PP_1217	0.85	-2.5
1,395,149	-		PP_1217	0.85	-0.4
1,395,149	-		PP_1217	0.85	-1.7
1,395,173	+		PP_1217	0.87	-2.4
1,395,191	+		PP_1217	0.89	+0.4
1,395,191	+		PP_1217	0.89	+0.6
1,395,191	+		PP_1217	0.89	-1.7
1,395,192	-		PP_1217	0.89	-1.0
1,395,192	-		PP_1217	0.89	-1.0
1,395,192	-		PP_1217	0.89	-1.0
1,395,192	-		PP_1217	0.89	+1.6
1,395,236	+				-0.7
1,395,236	+				-0.4
1,395,237	-				-1.7
1,395,237	-				+0.0
1,395,237	-				-1.8
1,395,256	+				+1.2
1,395,256	+				-0.5
1,395,257	-				-3.2
1,395,257	-				-2.8
1,395,257	-				-2.3