Strain Fitness in Pseudomonas putida KT2440 around PP_1197

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
1,370,838	+				-1.0
1,370,929	+				+0.7
1,370,929	+				+2.5
1,370,930	-				-0.9
1,370,930	-				+1.2
1,370,930	-				-0.6
1,370,938	+				-0.5
1,370,938	+				-1.0
1,370,965	+				-0.6
1,371,071	+		PP_1196	0.13	-0.8
1,371,092	-		PP_1196	0.16	-0.4
1,371,116	+		PP_1196	0.19	-2.6
1,371,116	+		PP_1196	0.19	-0.1
1,371,117	-		PP_1196	0.19	-0.3
1,371,117	-		PP_1196	0.19	+0.4
1,371,117	-		PP_1196	0.19	-2.1
1,371,117	-		PP_1196	0.19	+2.2
1,371,117	-		PP_1196	0.19	+0.6
1,371,137	+		PP_1196	0.22	+1.1
1,371,137	+		PP_1196	0.22	-2.5
1,371,138	-		PP_1196	0.22	-0.5
1,371,138	-		PP_1196	0.22	+0.2
1,371,158	+		PP_1196	0.25	-0.2
1,371,159	-		PP_1196	0.25	+0.4
1,371,166	+		PP_1196	0.26	+0.6
1,371,184	+		PP_1196	0.28	-2.9
1,371,184	+		PP_1196	0.28	+0.9
1,371,185	-		PP_1196	0.28	+1.1
1,371,281	+		PP_1196	0.41	-0.3
1,371,281	+		PP_1196	0.41	-0.6
1,371,281	+		PP_1196	0.41	-0.6
1,371,383	+		PP_1196	0.54	-0.9
1,371,384	-		PP_1196	0.54	-0.4
1,371,389	+		PP_1196	0.55	-0.4
1,371,390	-		PP_1196	0.55	-1.3
1,371,390	-		PP_1196	0.55	+0.1
1,371,409	-		PP_1196	0.58	-0.3
1,371,409	-		PP_1196	0.58	+1.0
1,371,499	-		PP_1196	0.70	-1.4
1,371,538	+		PP_1196	0.75	+1.5
1,371,557	+		PP_1196	0.77	-0.6
1,371,557	+		PP_1196	0.77	+0.9
1,371,557	+		PP_1196	0.77	+0.5
1,371,558	-		PP_1196	0.78	-0.9
1,371,607	+		PP_1196	0.84	+0.9
1,371,607	+		PP_1196	0.84	+0.4
1,371,607	+		PP_1196	0.84	-0.6
1,371,655	+				-0.6
1,371,656	+				-1.8
1,371,656	+				+0.1
1,371,657	-				+0.3
1,371,800	+				+1.2
1,371,801	-				+3.1
1,371,825	-				+0.2
1,371,825	-				-0.5
1,371,825	-				+0.7
1,372,112	-		PP_1197	0.23	+1.4
1,372,175	+		PP_1197	0.28	-0.4
1,372,352	+		PP_1197	0.42	+1.3
1,372,412	+		PP_1197	0.46	-2.7
1,372,412	+		PP_1197	0.46	+1.2
1,372,412	+		PP_1197	0.46	-0.3
1,372,413	-		PP_1197	0.46	-0.9
1,372,413	-		PP_1197	0.46	-0.9
1,372,413	-		PP_1197	0.46	+0.1
1,372,418	+		PP_1197	0.46	+1.5
1,372,418	+		PP_1197	0.46	-1.2
1,372,418	+		PP_1197	0.46	-3.2
1,372,419	-		PP_1197	0.47	-0.2
1,372,419	-		PP_1197	0.47	+0.3
1,372,419	-		PP_1197	0.47	+2.0
1,372,419	-		PP_1197	0.47	+0.7
1,372,419	-		PP_1197	0.47	+1.6
1,372,419	-		PP_1197	0.47	+1.5
1,372,514	+		PP_1197	0.54	+1.6
1,372,514	+		PP_1197	0.54	+3.5
1,372,514	+		PP_1197	0.54	+2.0
1,372,515	-		PP_1197	0.54	-1.8
1,372,565	+		PP_1197	0.58	+0.8
1,372,701	-		PP_1197	0.68	+0.8
1,372,706	+		PP_1197	0.68	+0.2
1,372,707	-				+0.3
1,372,707	-		PP_1197	0.68	+1.8
1,372,707	-		PP_1197	0.68	+0.9
1,372,804	+		PP_1197	0.75	+0.2
1,373,006	+				-1.6
1,373,007	-				+3.4
1,373,007	-				+0.1
1,373,024	+				+0.5
1,373,024	+				+1.1
1,373,025	-				+0.8
1,373,092	+				-0.8
1,373,093	-				-2.8
1,373,258	+				-0.0
1,373,307	+				+0.3
1,373,307	+				+1.3
1,373,307	+				+0.4
1,373,308	-				-0.7
1,373,329	-				+0.5
1,373,332	+				+1.1
1,373,332	+				+0.6
1,373,332	+				+0.1
1,373,333	-				-0.5
1,373,333	-				-2.5
1,373,333	-				-0.9
1,373,333	-				-0.7
1,373,333	-				-3.1
1,373,333	-				-1.2
1,373,350	-				-1.7
1,373,350	-				-1.0
1,373,350	-				-2.3
1,373,350	-				-3.7
1,373,367	-		PP_1198	0.12	-1.7
1,373,434	-		PP_1198	0.35	-2.9
1,373,434	-		PP_1198	0.35	-1.6
1,373,443	-		PP_1198	0.38	-2.3
1,373,456	+		PP_1198	0.42	-0.9
1,373,457	-		PP_1198	0.42	-1.6
1,373,457	-		PP_1198	0.42	+0.6
1,373,637	-				-0.9
1,373,637	-				+0.5
1,373,695	-		PP_1199	0.23	+0.8
1,373,695	-		PP_1199	0.23	-0.2
1,373,736	+		PP_1199	0.35	+0.6
1,373,737	-		PP_1199	0.35	+1.1
1,373,739	+		PP_1199	0.36	+0.9
1,373,739	+		PP_1199	0.36	+0.8
1,373,740	-		PP_1199	0.36	+2.2
1,373,740	-				+1.6
1,373,751	-				+0.9
1,373,751	-		PP_1199	0.40	+0.4
1,373,751	-		PP_1199	0.40	-2.4
1,373,751	-		PP_1199	0.40	-1.2
1,373,850	+		PP_1199	0.69	+0.5
1,373,909	+		PP_1199	0.87	-0.9
1,373,909	+		PP_1199	0.87	-1.1
1,373,909	+		PP_1199	0.87	-0.4
1,373,971	-				-0.7
1,373,983	+				-0.1
1,373,983	+				+1.0
1,373,983	+				-1.2
1,373,984	-				-0.6
1,373,984	-				-0.0
1,373,984	-				+0.4
1,373,984	-				-1.0
1,373,984	-				-0.1
1,373,984	-				+0.9
1,373,991	-				-0.4
1,373,991	-				+0.6
1,374,044	+				-1.6
1,374,044	+				-0.4
1,374,046	+				+1.4
1,374,047	-				-0.0
1,374,047	-				+0.9
1,374,047	-				-0.3
1,374,068	+				-0.0
1,374,069	-				-0.2
1,374,117	-				-0.9
1,374,117	-				+0.5