Strain Fitness in Pseudomonas putida KT2440 around PP_1171

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
1,345,140	+				-0.5
1,345,192	+				-0.0
1,345,297	+		PP_1170	0.13	-0.1
1,345,298	-		PP_1170	0.13	+0.9
1,345,298	-		PP_1170	0.13	-0.5
1,345,430	-		PP_1170	0.28	+0.2
1,345,475	-		PP_1170	0.33	-0.3
1,345,531	+		PP_1170	0.40	+0.9
1,345,579	+		PP_1170	0.45	-0.6
1,345,579	+		PP_1170	0.45	+0.7
1,345,579	+		PP_1170	0.45	+0.6
1,345,579	+		PP_1170	0.45	+0.3
1,345,579	+		PP_1170	0.45	+0.6
1,345,580	-				+0.6
1,345,580	-		PP_1170	0.45	-0.4
1,345,580	-		PP_1170	0.45	-1.2
1,345,980	-				-0.8
1,346,126	+				-2.9
1,346,126	+				+0.7
1,346,127	-				-0.1
1,346,206	+		PP_1171	0.15	-0.3
1,346,206	+		PP_1171	0.15	-0.5
1,346,206	+		PP_1171	0.15	+0.5
1,346,206	+		PP_1171	0.15	+2.2
1,346,206	+		PP_1171	0.15	-1.0
1,346,210	+		PP_1171	0.15	+0.1
1,346,210	+		PP_1171	0.15	+0.7
1,346,210	+		PP_1171	0.15	+0.3
1,346,211	-		PP_1171	0.15	+0.3
1,346,211	-		PP_1171	0.15	-0.7
1,346,211	-		PP_1171	0.15	-0.2
1,346,420	+		PP_1171	0.41	-0.1
1,346,433	-		PP_1171	0.43	-0.1
1,346,433	-		PP_1171	0.43	-1.5
1,346,433	-				+2.6
1,346,477	+		PP_1171	0.48	+0.6
1,346,477	+		PP_1171	0.48	+0.2
1,346,477	+		PP_1171	0.48	+1.2
1,346,477	+		PP_1171	0.48	-1.7
1,346,477	+		PP_1171	0.48	+0.4
1,346,477	+		PP_1171	0.48	+0.6
1,346,477	+		PP_1171	0.48	+0.2
1,346,478	-		PP_1171	0.49	-1.0
1,346,478	-		PP_1171	0.49	+0.0
1,346,528	+		PP_1171	0.55	-0.6
1,346,529	-		PP_1171	0.55	+1.0
1,346,597	+		PP_1171	0.63	-1.0
1,346,687	-				+2.2
1,346,703	+		PP_1171	0.76	+0.2
1,346,704	-		PP_1171	0.77	-1.6
1,346,737	-		PP_1171	0.81	-1.2
1,346,807	+		PP_1171	0.89	+0.4
1,346,910	-				-1.3
1,347,138	+				-0.8
1,347,138	+				+0.5
1,347,138	+				+4.2
1,347,191	-				-0.3
1,347,268	+				+0.8
1,347,268	+				+0.2
1,347,315	+				-0.1
1,347,380	-				+0.2
1,347,380	-				+1.1
1,347,395	+				-0.7
1,347,396	-				-0.9
1,347,426	+		PP_1173	0.10	+1.0
1,347,426	+		PP_1173	0.10	-0.0
1,347,426	+		PP_1173	0.10	+0.6
1,347,426	+		PP_1173	0.10	+0.8
1,347,426	+		PP_1173	0.10	+0.9
1,347,426	+		PP_1173	0.10	-0.2
1,347,427	-				+2.2
1,347,501	+		PP_1173	0.17	+1.2
1,347,502	-		PP_1173	0.17	-1.7
1,347,502	-		PP_1173	0.17	-0.8
1,347,603	+		PP_1173	0.25	+0.6
1,347,603	+		PP_1173	0.25	+1.3
1,347,603	+		PP_1173	0.25	+0.3
1,347,603	+		PP_1173	0.25	+0.7
1,347,604	-		PP_1173	0.25	-0.0
1,347,604	-		PP_1173	0.25	-0.1
1,347,655	+		PP_1173	0.29	-0.3
1,347,655	+		PP_1173	0.29	+1.5
1,347,656	-		PP_1173	0.29	+0.3
1,347,703	-		PP_1173	0.33	-0.3
1,347,726	+		PP_1173	0.35	-1.2
1,347,726	+		PP_1173	0.35	-0.4
1,347,727	-		PP_1173	0.35	+0.4
1,347,783	+		PP_1173	0.39	+1.0
1,347,844	-		PP_1173	0.44	-2.1
1,347,844	-		PP_1173	0.44	-0.7
1,347,844	-		PP_1173	0.44	+0.1
1,347,855	+		PP_1173	0.45	-0.1