Strain Fitness in Pseudomonas putida KT2440 around PP_1154

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1152 and PP_1153 are separated by 145 nucleotidesPP_1153 and PP_1154 are separated by 14 nucleotidesPP_1154 and PP_1155 are separated by 51 nucleotides PP_1152: PP_1152 - putative membrane fusion efflux protein, at 1,318,777 to 1,319,646 _1152 PP_1153: PP_1153 - putative lipoprotein, at 1,319,792 to 1,320,130 _1153 PP_1154: PP_1154 - Sensory box protein, at 1,320,145 to 1,322,730 _1154 PP_1155: PP_1155 - YaiC/YhcK/ArdA family protein, at 1,322,782 to 1,323,855 _1155 Position (kb) 1320 1321 1322 1323Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1319.256 kb on + strand, within PP_1152at 1319.256 kb on + strand, within PP_1152at 1319.256 kb on + strand, within PP_1152at 1319.257 kb on - strand, within PP_1152at 1319.257 kb on - strand, within PP_1152at 1319.287 kb on + strand, within PP_1152at 1319.287 kb on + strandat 1319.288 kb on - strand, within PP_1152at 1319.288 kb on - strand, within PP_1152at 1319.288 kb on - strand, within PP_1152at 1319.338 kb on + strand, within PP_1152at 1319.338 kb on + strand, within PP_1152at 1319.338 kb on + strand, within PP_1152at 1319.339 kb on - strand, within PP_1152at 1319.339 kb on - strand, within PP_1152at 1319.339 kb on - strand, within PP_1152at 1319.339 kb on - strand, within PP_1152at 1319.339 kb on - strand, within PP_1152at 1319.339 kb on - strand, within PP_1152at 1319.546 kb on + strand, within PP_1152at 1319.706 kb on + strandat 1319.707 kb on - strandat 1319.707 kb on - strandat 1319.762 kb on + strandat 1319.762 kb on + strandat 1319.787 kb on - strandat 1319.835 kb on + strand, within PP_1153at 1319.926 kb on + strand, within PP_1153at 1319.927 kb on - strand, within PP_1153at 1319.927 kb on - strand, within PP_1153at 1320.146 kb on + strandat 1320.147 kb on - strandat 1320.225 kb on - strandat 1320.227 kb on + strandat 1320.227 kb on + strandat 1320.227 kb on + strandat 1320.228 kb on - strandat 1320.426 kb on + strand, within PP_1154at 1320.426 kb on + strand, within PP_1154at 1320.427 kb on - strand, within PP_1154at 1320.487 kb on + strand, within PP_1154at 1320.514 kb on + strand, within PP_1154at 1320.515 kb on - strand, within PP_1154at 1320.864 kb on - strand, within PP_1154at 1320.864 kb on - strand, within PP_1154at 1320.995 kb on + strand, within PP_1154at 1321.479 kb on + strand, within PP_1154at 1321.527 kb on + strand, within PP_1154at 1321.527 kb on + strand, within PP_1154at 1321.577 kb on + strand, within PP_1154at 1321.578 kb on - strand, within PP_1154at 1321.581 kb on + strand, within PP_1154at 1321.582 kb on - strand, within PP_1154at 1321.582 kb on - strand, within PP_1154at 1321.654 kb on - strand, within PP_1154at 1321.739 kb on + strand, within PP_1154at 1321.739 kb on + strand, within PP_1154at 1321.740 kb on - strand, within PP_1154at 1321.904 kb on + strand, within PP_1154at 1321.904 kb on + strand, within PP_1154at 1321.905 kb on - strand, within PP_1154at 1321.924 kb on + strand, within PP_1154at 1321.924 kb on + strand, within PP_1154at 1321.925 kb on - strand, within PP_1154at 1321.925 kb on - strand, within PP_1154at 1321.925 kb on - strand, within PP_1154at 1321.925 kb on - strand, within PP_1154at 1321.925 kb on - strand, within PP_1154at 1321.930 kb on + strand, within PP_1154at 1322.137 kb on + strand, within PP_1154at 1322.137 kb on + strand, within PP_1154at 1322.137 kb on + strand, within PP_1154at 1322.138 kb on - strand, within PP_1154at 1322.138 kb on - strand, within PP_1154at 1322.138 kb on - strand, within PP_1154at 1322.308 kb on + strand, within PP_1154at 1322.308 kb on + strand, within PP_1154at 1322.308 kb on + strand, within PP_1154at 1322.308 kb on + strand, within PP_1154at 1322.308 kb on + strand, within PP_1154at 1322.308 kb on + strand, within PP_1154at 1322.308 kb on + strand, within PP_1154at 1322.308 kb on + strand, within PP_1154at 1322.309 kb on - strand, within PP_1154at 1322.309 kb on - strand, within PP_1154at 1322.309 kb on - strand, within PP_1154at 1322.309 kb on - strand, within PP_1154at 1322.309 kb on - strand, within PP_1154at 1322.309 kb on - strand, within PP_1154at 1322.309 kb on - strand, within PP_1154at 1322.309 kb on - strand, within PP_1154at 1322.309 kb on - strand, within PP_1154at 1322.309 kb on - strand, within PP_1154at 1322.309 kb on - strand, within PP_1154at 1322.310 kb on + strand, within PP_1154at 1322.311 kb on - strand, within PP_1154at 1322.311 kb on - strand, within PP_1154at 1322.311 kb on - strand, within PP_1154at 1322.312 kb on + strand, within PP_1154at 1322.312 kb on + strand, within PP_1154at 1322.312 kb on + strand, within PP_1154at 1322.312 kb on + strand, within PP_1154at 1322.312 kb on + strand, within PP_1154at 1322.312 kb on + strand, within PP_1154at 1322.312 kb on + strand, within PP_1154at 1322.312 kb on + strand, within PP_1154at 1322.312 kb on + strand, within PP_1154at 1322.312 kb on + strand, within PP_1154at 1322.312 kb on + strand, within PP_1154at 1322.312 kb on + strand, within PP_1154at 1322.313 kb on - strand, within PP_1154at 1322.313 kb on - strand, within PP_1154at 1322.313 kb on - strand, within PP_1154at 1322.313 kb on - strand, within PP_1154at 1322.313 kb on - strand, within PP_1154at 1322.313 kb on - strand, within PP_1154at 1322.357 kb on + strand, within PP_1154at 1322.358 kb on - strand, within PP_1154at 1322.358 kb on - strand, within PP_1154at 1322.358 kb on - strand, within PP_1154at 1322.358 kb on - strand, within PP_1154at 1322.411 kb on + strand, within PP_1154at 1322.411 kb on + strand, within PP_1154at 1322.426 kb on - strand, within PP_1154at 1322.442 kb on - strand, within PP_1154at 1322.502 kb on - strandat 1322.568 kb on + strandat 1322.569 kb on - strandat 1322.865 kb on - strandat 1322.865 kb on - strandat 1322.865 kb on - strandat 1322.962 kb on + strand, within PP_1155at 1322.978 kb on + strand, within PP_1155at 1322.979 kb on - strand, within PP_1155at 1323.133 kb on + strand, within PP_1155at 1323.134 kb on - strand, within PP_1155at 1323.134 kb on - strand, within PP_1155at 1323.357 kb on - strand, within PP_1155at 1323.357 kb on - strand, within PP_1155at 1323.410 kb on + strand, within PP_1155at 1323.410 kb on + strand, within PP_1155at 1323.411 kb on - strand, within PP_1155at 1323.411 kb on - strandat 1323.411 kb on - strand, within PP_1155at 1323.472 kb on + strand, within PP_1155at 1323.680 kb on + strand, within PP_1155at 1323.681 kb on - strand, within PP_1155at 1323.681 kb on - strand, within PP_1155at 1323.715 kb on + strand, within PP_1155at 1323.715 kb on + strand, within PP_1155

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-methyl-1-butanol 0.1 vol% (C)
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1,319,256 + PP_1152 0.55 -0.3
1,319,256 + PP_1152 0.55 -1.0
1,319,256 + PP_1152 0.55 +1.4
1,319,257 - PP_1152 0.55 +0.9
1,319,257 - PP_1152 0.55 +0.8
1,319,287 + PP_1152 0.59 -1.1
1,319,287 + -0.4
1,319,288 - PP_1152 0.59 -0.4
1,319,288 - PP_1152 0.59 -0.4
1,319,288 - PP_1152 0.59 +1.2
1,319,338 + PP_1152 0.64 -2.0
1,319,338 + PP_1152 0.64 +1.5
1,319,338 + PP_1152 0.64 +1.5
1,319,339 - PP_1152 0.65 +0.4
1,319,339 - PP_1152 0.65 +0.1
1,319,339 - PP_1152 0.65 +0.3
1,319,339 - PP_1152 0.65 -0.1
1,319,339 - PP_1152 0.65 -0.7
1,319,339 - PP_1152 0.65 +0.7
1,319,546 + PP_1152 0.88 +3.2
1,319,706 + +0.6
1,319,707 - +0.3
1,319,707 - +1.8
1,319,762 + +0.7
1,319,762 + -0.5
1,319,787 - -1.7
1,319,835 + PP_1153 0.13 -1.2
1,319,926 + PP_1153 0.40 +0.8
1,319,927 - PP_1153 0.40 +0.8
1,319,927 - PP_1153 0.40 +0.5
1,320,146 + -1.4
1,320,147 - -0.8
1,320,225 - -3.0
1,320,227 + -0.6
1,320,227 + -1.2
1,320,227 + +0.2
1,320,228 - +0.2
1,320,426 + PP_1154 0.11 +0.1
1,320,426 + PP_1154 0.11 -1.2
1,320,427 - PP_1154 0.11 +0.7
1,320,487 + PP_1154 0.13 +0.4
1,320,514 + PP_1154 0.14 -0.4
1,320,515 - PP_1154 0.14 -0.3
1,320,864 - PP_1154 0.28 +1.9
1,320,864 - PP_1154 0.28 +0.4
1,320,995 + PP_1154 0.33 +0.6
1,321,479 + PP_1154 0.52 -0.5
1,321,527 + PP_1154 0.53 +0.8
1,321,527 + PP_1154 0.53 +0.5
1,321,577 + PP_1154 0.55 +0.5
1,321,578 - PP_1154 0.55 +0.8
1,321,581 + PP_1154 0.56 +0.9
1,321,582 - PP_1154 0.56 +0.9
1,321,582 - PP_1154 0.56 -1.4
1,321,654 - PP_1154 0.58 +1.1
1,321,739 + PP_1154 0.62 -0.8
1,321,739 + PP_1154 0.62 +0.2
1,321,740 - PP_1154 0.62 +0.0
1,321,904 + PP_1154 0.68 +0.8
1,321,904 + PP_1154 0.68 -2.2
1,321,905 - PP_1154 0.68 +0.8
1,321,924 + PP_1154 0.69 -0.8
1,321,924 + PP_1154 0.69 +1.2
1,321,925 - PP_1154 0.69 +1.0
1,321,925 - PP_1154 0.69 +0.9
1,321,925 - PP_1154 0.69 +1.1
1,321,925 - PP_1154 0.69 +0.2
1,321,925 - PP_1154 0.69 -0.3
1,321,930 + PP_1154 0.69 -0.6
1,322,137 + PP_1154 0.77 +0.2
1,322,137 + PP_1154 0.77 +0.4
1,322,137 + PP_1154 0.77 -1.8
1,322,138 - PP_1154 0.77 +0.9
1,322,138 - PP_1154 0.77 +0.9
1,322,138 - PP_1154 0.77 +0.9
1,322,308 + PP_1154 0.84 +0.2
1,322,308 + PP_1154 0.84 +1.4
1,322,308 + PP_1154 0.84 -0.2
1,322,308 + PP_1154 0.84 +0.7
1,322,308 + PP_1154 0.84 +0.7
1,322,308 + PP_1154 0.84 +0.7
1,322,308 + PP_1154 0.84 -0.3
1,322,308 + PP_1154 0.84 -1.1
1,322,309 - PP_1154 0.84 +1.1
1,322,309 - PP_1154 0.84 -0.5
1,322,309 - PP_1154 0.84 +1.4
1,322,309 - PP_1154 0.84 +0.8
1,322,309 - PP_1154 0.84 +1.4
1,322,309 - PP_1154 0.84 -0.0
1,322,309 - PP_1154 0.84 -0.1
1,322,309 - PP_1154 0.84 -0.4
1,322,309 - PP_1154 0.84 +1.1
1,322,309 - PP_1154 0.84 +1.2
1,322,309 - PP_1154 0.84 +0.8
1,322,310 + PP_1154 0.84 +1.5
1,322,311 - PP_1154 0.84 +0.8
1,322,311 - PP_1154 0.84 +0.7
1,322,311 - PP_1154 0.84 -0.6
1,322,312 + PP_1154 0.84 -1.9
1,322,312 + PP_1154 0.84 +1.5
1,322,312 + PP_1154 0.84 +1.0
1,322,312 + PP_1154 0.84 +0.9
1,322,312 + PP_1154 0.84 +1.4
1,322,312 + PP_1154 0.84 +1.8
1,322,312 + PP_1154 0.84 -0.2
1,322,312 + PP_1154 0.84 +0.2
1,322,312 + PP_1154 0.84 +1.0
1,322,312 + PP_1154 0.84 +0.5
1,322,312 + PP_1154 0.84 +0.5
1,322,312 + PP_1154 0.84 +1.4
1,322,313 - PP_1154 0.84 -1.2
1,322,313 - PP_1154 0.84 +0.9
1,322,313 - PP_1154 0.84 +1.0
1,322,313 - PP_1154 0.84 +0.4
1,322,313 - PP_1154 0.84 -0.1
1,322,313 - PP_1154 0.84 -0.9
1,322,357 + PP_1154 0.86 -0.9
1,322,358 - PP_1154 0.86 -0.9
1,322,358 - PP_1154 0.86 -1.5
1,322,358 - PP_1154 0.86 +0.9
1,322,358 - PP_1154 0.86 -0.4
1,322,411 + PP_1154 0.88 +0.7
1,322,411 + PP_1154 0.88 -0.6
1,322,426 - PP_1154 0.88 +0.8
1,322,442 - PP_1154 0.89 -1.2
1,322,502 - -0.7
1,322,568 + +0.4
1,322,569 - +0.3
1,322,865 - +0.5
1,322,865 - +0.4
1,322,865 - +0.1
1,322,962 + PP_1155 0.17 +0.5
1,322,978 + PP_1155 0.18 +0.4
1,322,979 - PP_1155 0.18 -0.1
1,323,133 + PP_1155 0.33 -0.8
1,323,134 - PP_1155 0.33 -1.5
1,323,134 - PP_1155 0.33 -0.8
1,323,357 - PP_1155 0.54 +1.1
1,323,357 - PP_1155 0.54 +0.2
1,323,410 + PP_1155 0.58 -0.3
1,323,410 + PP_1155 0.58 +0.3
1,323,411 - PP_1155 0.59 +1.1
1,323,411 - +1.6
1,323,411 - PP_1155 0.59 -0.4
1,323,472 + PP_1155 0.64 +0.2
1,323,680 + PP_1155 0.84 -0.4
1,323,681 - PP_1155 0.84 -1.0
1,323,681 - PP_1155 0.84 +1.1
1,323,715 + PP_1155 0.87 +0.9
1,323,715 + PP_1155 0.87 -1.3

Or see this region's nucleotide sequence