Strain Fitness in Pseudomonas putida KT2440 around PP_1139

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
1,303,197	+		PP_1137	0.75	+1.3
1,303,197	+		PP_1137	0.75	+0.3
1,303,197	+		PP_1137	0.75	-0.9
1,303,198	-		PP_1137	0.75	-2.3
1,303,198	-		PP_1137	0.75	-3.6
1,303,198	-		PP_1137	0.75	-1.8
1,303,198	-		PP_1137	0.75	+0.1
1,303,377	+				+0.5
1,303,377	+				-0.1
1,303,378	-				+0.6
1,303,378	-				-0.9
1,303,392	+				+0.5
1,303,393	-				+0.8
1,303,393	-				+1.1
1,303,475	-		PP_1138	0.13	-0.9
1,303,696	+		PP_1138	0.42	+0.1
1,303,738	-		PP_1138	0.47	+0.3
1,303,980	+		PP_1138	0.79	+0.3
1,303,980	+		PP_1138	0.79	-0.3
1,303,981	-		PP_1138	0.79	-2.0
1,304,172	+				-1.9
1,304,172	+				-0.7
1,304,601	-		PP_1139	0.37	-1.0
1,304,630	+		PP_1139	0.39	+0.1
1,304,630	+		PP_1139	0.39	-1.1
1,304,630	+		PP_1139	0.39	-0.4
1,304,630	+		PP_1139	0.39	-2.9
1,304,630	+		PP_1139	0.39	-0.1
1,304,630	+		PP_1139	0.39	-2.1
1,304,631	-		PP_1139	0.39	-0.3
1,304,631	-		PP_1139	0.39	-0.7
1,304,631	-		PP_1139	0.39	-0.6
1,304,631	-		PP_1139	0.39	-2.7
1,304,631	-		PP_1139	0.39	-1.6
1,304,631	-		PP_1139	0.39	-0.8
1,304,761	-		PP_1139	0.49	-0.5
1,304,814	-		PP_1139	0.54	-1.4
1,304,814	-		PP_1139	0.54	-2.8
1,304,814	-		PP_1139	0.54	-1.2
1,304,814	-		PP_1139	0.54	-3.4
1,304,814	-		PP_1139	0.54	+0.3
1,304,916	-		PP_1139	0.62	-0.9
1,304,933	+		PP_1139	0.63	-0.7
1,304,933	+		PP_1139	0.63	+0.2
1,304,933	+		PP_1139	0.63	-1.9
1,304,934	-		PP_1139	0.63	-3.0
1,304,934	-		PP_1139	0.63	-1.7
1,304,934	-		PP_1139	0.63	-0.3
1,304,934	-		PP_1139	0.63	-2.0
1,304,939	+		PP_1139	0.64	+0.2
1,304,940	-		PP_1139	0.64	-0.2
1,304,954	+		PP_1139	0.65	-1.4
1,304,955	-		PP_1139	0.65	-0.7
1,304,955	-		PP_1139	0.65	+0.4
1,304,955	-		PP_1139	0.65	-0.8
1,304,955	-		PP_1139	0.65	-0.4
1,304,955	-		PP_1139	0.65	-1.1
1,304,955	-		PP_1139	0.65	-2.4
1,305,004	-		PP_1139	0.69	-0.4
1,305,029	+		PP_1139	0.71	-1.7
1,305,030	-		PP_1139	0.71	-0.0
1,305,086	-		PP_1139	0.75	-0.1
1,305,119	+		PP_1139	0.78	-1.2
1,305,119	+		PP_1139	0.78	-1.0
1,305,119	+		PP_1139	0.78	-1.3
1,305,119	+		PP_1139	0.78	-1.1
1,305,119	+		PP_1139	0.78	-2.4
1,305,120	-		PP_1139	0.78	-2.3
1,305,120	-		PP_1139	0.78	-2.7
1,305,120	-		PP_1139	0.78	-1.7
1,305,120	-		PP_1139	0.78	-0.4
1,305,120	-		PP_1139	0.78	-1.2
1,305,146	+		PP_1139	0.80	-0.9
1,305,146	+		PP_1139	0.80	-0.6
1,305,147	-		PP_1139	0.80	-4.3
1,305,147	-		PP_1139	0.80	-1.2
1,305,147	-		PP_1139	0.80	+0.5
1,305,484	+				-0.9
1,305,485	-				+0.6
1,305,485	-				-2.1
1,305,641	-		PP_1140	0.27	-3.7
1,305,780	+				+0.6
1,305,856	+		PP_1140	0.50	-0.0
1,305,856	+		PP_1140	0.50	-0.7
1,305,856	+		PP_1140	0.50	-1.2
1,305,857	-		PP_1140	0.50	-1.1
1,305,857	-		PP_1140	0.50	-0.8
1,305,857	-		PP_1140	0.50	-0.7
1,305,867	+		PP_1140	0.51	-1.8
1,305,867	+		PP_1140	0.51	-1.6
1,305,867	+		PP_1140	0.51	-1.5
1,306,049	+		PP_1140	0.71	-0.6
1,306,054	+		PP_1140	0.72	+1.6
1,306,054	+		PP_1140	0.72	-0.6
1,306,054	+		PP_1140	0.72	-0.6
1,306,055	-		PP_1140	0.72	-0.6
1,306,055	-		PP_1140	0.72	-0.9
1,306,060	+		PP_1140	0.72	-0.6
1,306,060	+		PP_1140	0.72	-3.5
1,306,060	+		PP_1140	0.72	+0.1
1,306,061	-		PP_1140	0.72	+1.2
1,306,165	+		PP_1140	0.84	+1.9
1,306,165	+		PP_1140	0.84	-3.8
1,306,165	+		PP_1140	0.84	+0.1
1,306,166	-		PP_1140	0.84	+0.3
1,306,166	-		PP_1140	0.84	-0.5
1,306,166	-		PP_1140	0.84	+2.3
1,306,180	+		PP_1140	0.85	-2.4
1,306,180	+		PP_1140	0.85	-0.4
1,306,180	+		PP_1140	0.85	+0.1
1,306,180	+		PP_1140	0.85	-0.5
1,306,181	-		PP_1140	0.85	+0.3
1,306,181	-		PP_1140	0.85	+1.0
1,306,181	-		PP_1140	0.85	-0.2
1,306,181	-		PP_1140	0.85	-1.9
1,306,181	-		PP_1140	0.85	+0.3
1,306,181	-		PP_1140	0.85	-0.5
1,306,181	-		PP_1140	0.85	+0.6
1,306,181	-		PP_1140	0.85	+0.2
1,306,222	+		PP_1140	0.90	-2.5
1,306,223	-		PP_1140	0.90	+0.3
1,306,223	-		PP_1140	0.90	-4.0
1,306,255	+				-0.9
1,306,255	+				-3.1
1,306,255	+				+0.6
1,306,255	+				-1.4
1,306,255	+				-1.1
1,306,255	+				-1.0
1,306,256	-				-2.0
1,306,256	-				-0.9
1,306,256	-				-2.3
1,306,256	-				+0.8
1,306,256	-				+0.4
1,306,256	-				+0.7
1,306,256	-				-2.4
1,306,303	+				-2.2
1,306,304	-				+0.9
1,306,317	+				-1.6
1,306,318	-				-0.3
1,306,389	+				+1.9