Strain Fitness in Pseudomonas putida KT2440 around PP_1086

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
1,243,504	+		PP_1084	0.66	-0.0
1,243,504	+		PP_1084	0.66	-1.3
1,243,505	-		PP_1084	0.66	+1.3
1,243,709	+				-0.2
1,243,710	-				+1.3
1,243,710	-				+1.7
1,243,756	-				+0.0
1,243,803	+				-0.5
1,243,803	+				+0.1
1,243,804	-				+0.2
1,243,804	-				+0.8
1,243,974	-		PP_1085	0.24	+0.1
1,244,276	+				-1.7
1,244,276	+				+1.7
1,244,276	+		PP_1085	0.69	+0.1
1,244,277	-		PP_1085	0.69	-2.3
1,244,277	-		PP_1085	0.69	-1.7
1,244,399	+		PP_1085	0.87	+0.7
1,244,400	-		PP_1085	0.87	+0.7
1,245,593	+				-0.3
1,245,630	+				-0.7
1,245,671	-				-1.1
1,245,813	+		PP_1087	0.18	-1.5
1,245,814	-		PP_1087	0.18	+1.3
1,246,035	+		PP_1087	0.41	+1.1
1,246,035	+		PP_1087	0.41	+0.5
1,246,036	-		PP_1087	0.41	-0.0
1,246,054	+		PP_1087	0.43	+0.2
1,246,055	-		PP_1087	0.43	+1.6
1,246,055	-		PP_1087	0.43	-0.3
1,246,118	-		PP_1087	0.49	-1.1
1,246,118	-		PP_1087	0.49	-0.3
1,246,118	-		PP_1087	0.49	-1.1
1,246,126	+		PP_1087	0.50	+1.5
1,246,162	+		PP_1087	0.54	-0.4
1,246,163	-		PP_1087	0.54	-3.0
1,246,163	-		PP_1087	0.54	-0.4
1,246,255	+		PP_1087	0.64	+0.3
1,246,255	+		PP_1087	0.64	+0.3
1,246,255	+		PP_1087	0.64	-1.7
1,246,256	-		PP_1087	0.64	+2.1
1,246,256	-		PP_1087	0.64	-0.5
1,246,256	-		PP_1087	0.64	-1.3
1,246,327	-		PP_1087	0.71	-0.4
1,246,433	-		PP_1087	0.82	-0.1