Strain Fitness in Pseudomonas putida KT2440 around PP_1073

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
1,230,280	-		PP_1072	0.80	-1.7
1,230,330	-		PP_1072	0.81	-0.6
1,230,330	-		PP_1072	0.81	+1.7
1,230,330	-		PP_1072	0.81	+0.4
1,230,623	+		PP_1072	0.88	-0.9
1,230,624	-		PP_1072	0.88	+0.9
1,230,624	-		PP_1072	0.88	-1.9
1,230,714	+				+0.1
1,230,919	+				+1.3
1,230,919	+				+0.3
1,230,959	+				+0.4
1,230,960	-				+1.8
1,230,978	+				+1.2
1,230,978	+				-0.9
1,231,001	+				+0.7
1,231,002	-				+1.6
1,231,002	-				+0.8
1,231,162	+				-0.3
1,231,162	+				-1.0
1,231,163	-				+1.0
1,231,166	+				+0.3
1,231,167	-				+0.1
1,231,183	-				-1.3
1,232,974	-				+1.5
1,233,322	-		PP_1074	0.52	+1.5
1,233,322	-		PP_1074	0.52	+0.2
1,233,431	-		PP_1074	0.66	+2.1
1,233,485	+		PP_1074	0.74	+1.3
1,233,512	+		PP_1074	0.77	-0.4
1,233,513	-		PP_1074	0.77	+0.3
1,233,629	+				+0.9
1,233,630	-				+1.5
1,233,630	-				-0.1