Strain Fitness in Pseudomonas putida KT2440 around PP_1060

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
1,210,058	+		PP_1059	0.47	+1.1
1,210,163	+		PP_1059	0.54	-0.3
1,210,197	-		PP_1059	0.57	+0.6
1,210,352	+		PP_1059	0.68	+0.2
1,210,352	+		PP_1059	0.68	+0.3
1,210,352	+		PP_1059	0.68	-1.8
1,210,352	+		PP_1059	0.68	+0.1
1,210,353	-		PP_1059	0.68	+1.3
1,210,353	-		PP_1059	0.68	+0.7
1,210,353	-		PP_1059	0.68	-0.5
1,210,354	+		PP_1059	0.68	+0.2
1,210,355	-		PP_1059	0.68	+2.0
1,210,472	+		PP_1059	0.76	+0.4
1,210,472	+		PP_1059	0.76	+0.9
1,210,472	+		PP_1059	0.76	+0.5
1,210,472	+		PP_1059	0.76	+2.0
1,210,473	-		PP_1059	0.76	-0.3
1,210,473	-		PP_1059	0.76	+0.4
1,210,611	-		PP_1059	0.86	+1.2
1,210,615	+		PP_1059	0.86	+2.5
1,210,615	+		PP_1059	0.86	+2.5
1,210,616	-		PP_1059	0.86	+1.0
1,210,616	-		PP_1059	0.86	-0.1
1,210,616	-		PP_1059	0.86	+1.2
1,210,616	-		PP_1059	0.86	+2.3
1,210,640	+		PP_1059	0.88	-0.3
1,210,640	+		PP_1059	0.88	+0.1
1,210,686	-				+0.9
1,210,696	+				+1.4
1,210,712	+				+1.6
1,210,712	+				-0.0
1,210,713	-				+0.2
1,210,713	-				+3.7
1,210,751	+				-0.9
1,210,752	-				+1.8
1,210,752	-				+1.0
1,210,752	-				+1.8
1,210,752	-				+0.8
1,210,752	-				+1.7
1,210,754	+				+1.0
1,210,754	+				+1.2
1,210,755	-				+2.1
1,210,799	-				+1.0
1,210,911	+				-0.1
1,210,911	+				-0.7
1,210,912	-				-3.2
1,210,989	+				-2.4
1,211,699	+		PP_1060	0.53	+1.3
1,211,699	+		PP_1060	0.53	-1.6
1,211,875	-		PP_1060	0.63	-1.2
1,212,006	+		PP_1060	0.72	+0.3
1,212,111	+		PP_1060	0.78	-1.5
1,212,111	+		PP_1060	0.78	-1.2
1,212,111	+		PP_1060	0.78	-1.4
1,212,112	-		PP_1060	0.78	-0.6
1,212,112	-		PP_1060	0.78	-1.4
1,212,112	-		PP_1060	0.78	+0.4
1,212,112	-		PP_1060	0.78	-0.1
1,212,112	-		PP_1060	0.78	-0.5
1,212,113	+		PP_1060	0.78	-3.0
1,212,113	+		PP_1060	0.78	+1.6
1,212,114	-		PP_1060	0.78	-2.1
1,212,114	-		PP_1060	0.78	-1.3
1,212,114	-		PP_1060	0.78	-2.0
1,212,114	-		PP_1060	0.78	-0.0
1,212,114	-		PP_1060	0.78	-1.5
1,212,168	+		PP_1060	0.82	-3.7
1,212,265	-		PP_1060	0.88	-1.6
1,212,289	-		PP_1060	0.89	+0.9
1,212,466	+				-0.6
1,212,466	+				-3.4
1,212,467	-				+0.5
1,212,467	-				-1.3
1,212,549	+				+0.4
1,212,670	+				-1.1
1,212,745	+				+0.2
1,212,746	-				+0.3
1,212,746	-				+0.6
1,212,752	-				-2.7
1,212,927	+				-0.2
1,212,927	+				-0.0
1,212,927	+				-0.7
1,212,928	-				+1.1
1,212,928	-				+0.3
1,212,928	-				-0.1
1,212,928	-				-0.2
1,212,930	+				-0.1
1,212,931	-				-2.4
1,213,018	+				+0.1
1,213,050	+				-0.5
1,213,051	-				+0.5
1,213,051	-				+0.1
1,213,229	+		PP_1061	0.13	+0.6
1,213,229	+		PP_1061	0.13	+0.7
1,213,425	+		PP_1061	0.18	-0.9
1,213,425	+		PP_1061	0.18	+1.4
1,213,426	-		PP_1061	0.18	+1.0