Strain Fitness in Pseudomonas putida KT2440 around PP_0999

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
1,136,686	+		PP_0997	0.81	+0.3
1,136,686	+				+0.2
1,136,686	+		PP_0997	0.81	-0.6
1,136,687	-		PP_0997	0.81	-1.2
1,136,687	-		PP_0997	0.81	+0.2
1,136,687	-		PP_0997	0.81	-2.2
1,136,690	+		PP_0997	0.81	+0.7
1,136,690	+		PP_0997	0.81	-1.1
1,136,691	-		PP_0997	0.81	-0.4
1,136,794	+		PP_0997	0.88	-0.9
1,136,828	+				-3.7
1,136,859	+				-1.0
1,136,860	-				-2.1
1,136,860	-				+0.0
1,137,009	-				-0.7
1,137,089	-				+0.2
1,137,186	+		PP_0998	0.17	+0.5
1,137,186	+		PP_0998	0.17	+1.2
1,137,186	+		PP_0998	0.17	-2.5
1,137,186	+		PP_0998	0.17	-0.5
1,137,186	+		PP_0998	0.17	-1.6
1,137,186	+		PP_0998	0.17	-0.8
1,137,186	+		PP_0998	0.17	-2.0
1,137,187	-		PP_0998	0.17	-3.0
1,137,187	-		PP_0998	0.17	-1.1
1,137,195	-		PP_0998	0.19	+0.2
1,137,245	+		PP_0998	0.30	-0.6
1,137,245	+		PP_0998	0.30	-0.6
1,137,246	-		PP_0998	0.31	+0.6
1,137,269	-		PP_0998	0.36	-3.7
1,137,363	+		PP_0998	0.58	-0.7
1,137,364	-		PP_0998	0.58	-1.1
1,137,364	-		PP_0998	0.58	-1.6
1,137,399	-		PP_0998	0.66	-1.3
1,137,416	+		PP_0998	0.70	-0.5
1,137,416	+		PP_0998	0.70	+0.7
1,137,416	+		PP_0998	0.70	+0.3
1,137,417	-		PP_0998	0.70	-3.4
1,137,457	+		PP_0998	0.80	-1.1
1,137,457	+		PP_0998	0.80	-2.0
1,137,457	+		PP_0998	0.80	-3.2
1,137,457	+		PP_0998	0.80	-0.6
1,137,457	+		PP_0998	0.80	-0.3
1,137,457	+		PP_0998	0.80	-3.5
1,137,457	+		PP_0998	0.80	-3.2
1,137,457	+		PP_0998	0.80	-3.0
1,137,457	+		PP_0998	0.80	-2.5
1,137,458	-		PP_0998	0.80	-3.3
1,137,458	-		PP_0998	0.80	-4.3
1,137,458	-		PP_0998	0.80	-2.2
1,137,473	+		PP_0998	0.83	-0.8
1,137,487	+		PP_0998	0.87	-0.6
1,137,488	-		PP_0998	0.87	-1.8
1,137,547	+				-1.1
1,137,547	+				-1.6
1,137,775	+		PP_0999	0.25	-0.6
1,137,775	+		PP_0999	0.25	-1.2
1,137,776	-		PP_0999	0.25	+1.2
1,137,898	+		PP_0999	0.38	+0.8
1,137,898	+		PP_0999	0.38	+0.9
1,137,898	+		PP_0999	0.38	+0.1
1,137,898	+		PP_0999	0.38	+0.3
1,137,899	-		PP_0999	0.39	+1.4
1,138,018	+		PP_0999	0.51	-0.2
1,138,087	+		PP_0999	0.59	+0.5
1,138,279	+		PP_0999	0.79	-0.2
1,138,388	+				-0.9
1,138,463	+				-0.5
1,138,631	+				+1.3
1,138,635	+				+0.9
1,138,635	+				+0.8
1,138,635	+				+0.0
1,138,635	+				-0.5
1,138,635	+				-1.8
1,138,636	-				+1.7
1,138,636	-				+0.2
1,138,637	+				+0.9
1,138,637	+				+0.7
1,138,638	-				+0.1
1,138,884	+		PP_1000	0.25	+0.3
1,139,163	+		PP_1000	0.52	+1.1
1,139,163	+		PP_1000	0.52	+0.2
1,139,170	-		PP_1000	0.53	-1.7
1,139,170	-		PP_1000	0.53	+1.7
1,139,170	-		PP_1000	0.53	+0.8
1,139,244	+		PP_1000	0.60	+0.4
1,139,326	-		PP_1000	0.68	+1.0
1,139,340	+		PP_1000	0.70	+0.2
1,139,340	+		PP_1000	0.70	+0.0
1,139,340	+		PP_1000	0.70	+1.1
1,139,341	-		PP_1000	0.70	+0.4
1,139,341	-		PP_1000	0.70	+1.5
1,139,415	+		PP_1000	0.77	+2.2
1,139,416	-		PP_1000	0.77	-0.6
1,139,416	-		PP_1000	0.77	+1.1
1,139,439	+		PP_1000	0.80	-0.5
1,139,439	+		PP_1000	0.80	+1.3
1,139,440	-		PP_1000	0.80	-2.0