Strain Fitness in Pseudomonas putida KT2440 around PP_0988

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0987 and PP_0988 are separated by 148 nucleotidesPP_0988 and PP_0989 are separated by 11 nucleotidesPP_0989 and PP_0990 are separated by 303 nucleotides PP_0987: PP_0987 - L-serine dehydratase, at 1,125,170 to 1,126,546 _0987 PP_0988: PP_0988 - glycine dehydrogenase, at 1,126,695 to 1,129,550 _0988 PP_0989: PP_0989 - glycine cleavage system H protein 1, at 1,129,562 to 1,129,945 _0989 PP_0990: PP_0990 - DoxX family protein, at 1,130,249 to 1,130,635 _0990 Position (kb) 1126 1127 1128 1129 1130Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1125.735 kb on + strand, within PP_0987at 1125.735 kb on + strand, within PP_0987at 1125.807 kb on + strand, within PP_0987at 1125.851 kb on + strand, within PP_0987at 1125.851 kb on + strand, within PP_0987at 1125.851 kb on + strand, within PP_0987at 1125.852 kb on - strand, within PP_0987at 1125.852 kb on - strand, within PP_0987at 1125.852 kb on - strand, within PP_0987at 1125.852 kb on - strand, within PP_0987at 1126.033 kb on - strand, within PP_0987at 1126.116 kb on + strand, within PP_0987at 1126.117 kb on - strand, within PP_0987at 1126.117 kb on - strand, within PP_0987at 1126.117 kb on - strand, within PP_0987at 1126.183 kb on - strand, within PP_0987at 1126.183 kb on - strand, within PP_0987at 1126.183 kb on - strand, within PP_0987at 1126.395 kb on + strand, within PP_0987at 1126.396 kb on - strand, within PP_0987at 1126.396 kb on - strand, within PP_0987at 1126.396 kb on - strand, within PP_0987at 1126.588 kb on + strandat 1126.618 kb on + strandat 1126.618 kb on + strandat 1126.619 kb on - strandat 1126.619 kb on - strandat 1126.619 kb on - strandat 1126.619 kb on - strandat 1126.620 kb on + strandat 1126.620 kb on + strandat 1126.620 kb on + strandat 1126.621 kb on - strandat 1126.653 kb on + strandat 1126.653 kb on + strandat 1126.654 kb on - strandat 1126.694 kb on - strandat 1126.708 kb on + strandat 1126.816 kb on + strandat 1126.817 kb on - strandat 1126.819 kb on - strandat 1126.819 kb on - strandat 1126.837 kb on + strandat 1126.837 kb on + strandat 1127.170 kb on + strand, within PP_0988at 1127.171 kb on - strand, within PP_0988at 1127.182 kb on + strand, within PP_0988at 1127.182 kb on + strand, within PP_0988at 1127.183 kb on - strand, within PP_0988at 1127.210 kb on - strand, within PP_0988at 1127.273 kb on + strand, within PP_0988at 1127.273 kb on + strand, within PP_0988at 1127.274 kb on - strand, within PP_0988at 1127.275 kb on + strand, within PP_0988at 1127.275 kb on + strand, within PP_0988at 1127.275 kb on + strand, within PP_0988at 1127.275 kb on + strand, within PP_0988at 1127.275 kb on + strand, within PP_0988at 1127.275 kb on + strand, within PP_0988at 1127.275 kb on + strand, within PP_0988at 1127.275 kb on + strand, within PP_0988at 1127.275 kb on + strand, within PP_0988at 1127.276 kb on - strand, within PP_0988at 1127.276 kb on - strand, within PP_0988at 1127.276 kb on - strand, within PP_0988at 1127.276 kb on - strand, within PP_0988at 1127.530 kb on + strand, within PP_0988at 1127.530 kb on + strand, within PP_0988at 1127.530 kb on + strand, within PP_0988at 1127.608 kb on + strand, within PP_0988at 1127.609 kb on - strand, within PP_0988at 1127.609 kb on - strand, within PP_0988at 1127.778 kb on - strand, within PP_0988at 1127.810 kb on - strand, within PP_0988at 1127.836 kb on + strand, within PP_0988at 1127.837 kb on - strand, within PP_0988at 1127.837 kb on - strand, within PP_0988at 1127.837 kb on - strand, within PP_0988at 1127.881 kb on + strand, within PP_0988at 1127.932 kb on + strand, within PP_0988at 1127.932 kb on + strand, within PP_0988at 1127.933 kb on - strand, within PP_0988at 1128.094 kb on + strand, within PP_0988at 1128.122 kb on - strand, within PP_0988at 1128.420 kb on + strand, within PP_0988at 1128.509 kb on - strand, within PP_0988at 1128.703 kb on + strand, within PP_0988at 1128.704 kb on - strand, within PP_0988at 1129.217 kb on - strand, within PP_0988at 1129.225 kb on + strand, within PP_0988at 1129.225 kb on + strand, within PP_0988at 1129.226 kb on - strand, within PP_0988at 1129.234 kb on + strand, within PP_0988at 1129.235 kb on - strand, within PP_0988at 1129.291 kb on + strandat 1129.291 kb on + strandat 1129.292 kb on - strandat 1129.292 kb on - strandat 1129.292 kb on - strandat 1129.292 kb on - strandat 1129.292 kb on - strandat 1129.294 kb on + strandat 1129.309 kb on + strandat 1129.503 kb on + strandat 1129.504 kb on - strandat 1129.504 kb on - strandat 1129.504 kb on - strandat 1129.596 kb on + strandat 1129.749 kb on + strand, within PP_0989at 1129.749 kb on + strand, within PP_0989at 1129.749 kb on + strand, within PP_0989at 1129.749 kb on + strand, within PP_0989at 1129.864 kb on - strand, within PP_0989at 1130.002 kb on - strandat 1130.002 kb on - strandat 1130.083 kb on - strandat 1130.086 kb on + strandat 1130.087 kb on - strandat 1130.207 kb on + strandat 1130.493 kb on - strand, within PP_0990at 1130.493 kb on - strand, within PP_0990at 1130.505 kb on + strand, within PP_0990at 1130.506 kb on - strand, within PP_0990at 1130.526 kb on + strand, within PP_0990at 1130.526 kb on + strandat 1130.526 kb on + strand, within PP_0990at 1130.526 kb on + strand, within PP_0990at 1130.526 kb on + strand, within PP_0990at 1130.527 kb on - strand, within PP_0990at 1130.527 kb on - strand, within PP_0990at 1130.527 kb on - strand, within PP_0990at 1130.527 kb on - strand, within PP_0990at 1130.539 kb on + strand, within PP_0990at 1130.539 kb on + strand, within PP_0990at 1130.539 kb on + strandat 1130.540 kb on - strand, within PP_0990at 1130.540 kb on - strand, within PP_0990

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-methyl-1-butanol 0.1 vol% (C)
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1,125,735 + PP_0987 0.41 -1.7
1,125,735 + PP_0987 0.41 -2.3
1,125,807 + PP_0987 0.46 -1.6
1,125,851 + PP_0987 0.49 -0.6
1,125,851 + PP_0987 0.49 -0.7
1,125,851 + PP_0987 0.49 -1.3
1,125,852 - PP_0987 0.50 +0.4
1,125,852 - PP_0987 0.50 -2.0
1,125,852 - PP_0987 0.50 -2.3
1,125,852 - PP_0987 0.50 +0.1
1,126,033 - PP_0987 0.63 -0.6
1,126,116 + PP_0987 0.69 +0.2
1,126,117 - PP_0987 0.69 +1.4
1,126,117 - PP_0987 0.69 -0.8
1,126,117 - PP_0987 0.69 -1.0
1,126,183 - PP_0987 0.74 +0.2
1,126,183 - PP_0987 0.74 -1.0
1,126,183 - PP_0987 0.74 -0.6
1,126,395 + PP_0987 0.89 -2.0
1,126,396 - PP_0987 0.89 +0.4
1,126,396 - PP_0987 0.89 -0.1
1,126,396 - PP_0987 0.89 -1.6
1,126,588 + -0.9
1,126,618 + +1.0
1,126,618 + +0.0
1,126,619 - +0.2
1,126,619 - +2.0
1,126,619 - -0.7
1,126,619 - +1.1
1,126,620 + +2.7
1,126,620 + -3.7
1,126,620 + -0.8
1,126,621 - -0.4
1,126,653 + -0.8
1,126,653 + -3.5
1,126,654 - -0.4
1,126,694 - +0.0
1,126,708 + -1.8
1,126,816 + +0.3
1,126,817 - -2.9
1,126,819 - -2.2
1,126,819 - -0.9
1,126,837 + -0.7
1,126,837 + -3.7
1,127,170 + PP_0988 0.17 -2.1
1,127,171 - PP_0988 0.17 -2.4
1,127,182 + PP_0988 0.17 -1.5
1,127,182 + PP_0988 0.17 -0.1
1,127,183 - PP_0988 0.17 -1.1
1,127,210 - PP_0988 0.18 +0.1
1,127,273 + PP_0988 0.20 -3.2
1,127,273 + PP_0988 0.20 +0.1
1,127,274 - PP_0988 0.20 -2.0
1,127,275 + PP_0988 0.20 -1.9
1,127,275 + PP_0988 0.20 -1.9
1,127,275 + PP_0988 0.20 +0.0
1,127,275 + PP_0988 0.20 +0.6
1,127,275 + PP_0988 0.20 -0.8
1,127,275 + PP_0988 0.20 +0.5
1,127,275 + PP_0988 0.20 -0.8
1,127,275 + PP_0988 0.20 -2.2
1,127,275 + PP_0988 0.20 -2.4
1,127,276 - PP_0988 0.20 -1.8
1,127,276 - PP_0988 0.20 -0.7
1,127,276 - PP_0988 0.20 -0.8
1,127,276 - PP_0988 0.20 -0.4
1,127,530 + PP_0988 0.29 -0.9
1,127,530 + PP_0988 0.29 -0.6
1,127,530 + PP_0988 0.29 -1.4
1,127,608 + PP_0988 0.32 -2.4
1,127,609 - PP_0988 0.32 -2.0
1,127,609 - PP_0988 0.32 +0.3
1,127,778 - PP_0988 0.38 -0.6
1,127,810 - PP_0988 0.39 -1.9
1,127,836 + PP_0988 0.40 +0.9
1,127,837 - PP_0988 0.40 -0.2
1,127,837 - PP_0988 0.40 -1.0
1,127,837 - PP_0988 0.40 -3.6
1,127,881 + PP_0988 0.42 -3.2
1,127,932 + PP_0988 0.43 -2.9
1,127,932 + PP_0988 0.43 -3.1
1,127,933 - PP_0988 0.43 -0.8
1,128,094 + PP_0988 0.49 -2.8
1,128,122 - PP_0988 0.50 -2.3
1,128,420 + PP_0988 0.60 -1.2
1,128,509 - PP_0988 0.64 -1.3
1,128,703 + PP_0988 0.70 -3.2
1,128,704 - PP_0988 0.70 -3.1
1,129,217 - PP_0988 0.88 -3.2
1,129,225 + PP_0988 0.89 +0.1
1,129,225 + PP_0988 0.89 -0.9
1,129,226 - PP_0988 0.89 -1.5
1,129,234 + PP_0988 0.89 -1.5
1,129,235 - PP_0988 0.89 -0.6
1,129,291 + +1.1
1,129,291 + +0.5
1,129,292 - -1.9
1,129,292 - -1.9
1,129,292 - -3.4
1,129,292 - -0.7
1,129,292 - +0.7
1,129,294 + -2.4
1,129,309 + -3.1
1,129,503 + -2.6
1,129,504 - -4.4
1,129,504 - -0.9
1,129,504 - +0.3
1,129,596 + -1.3
1,129,749 + PP_0989 0.49 -2.3
1,129,749 + PP_0989 0.49 -0.7
1,129,749 + PP_0989 0.49 -0.4
1,129,749 + PP_0989 0.49 -0.3
1,129,864 - PP_0989 0.79 -0.6
1,130,002 - +0.8
1,130,002 - +0.4
1,130,083 - -1.0
1,130,086 + -0.4
1,130,087 - +1.2
1,130,207 + -1.6
1,130,493 - PP_0990 0.63 +0.9
1,130,493 - PP_0990 0.63 -2.9
1,130,505 + PP_0990 0.66 -0.1
1,130,506 - PP_0990 0.66 -0.2
1,130,526 + PP_0990 0.72 -0.3
1,130,526 + -0.3
1,130,526 + PP_0990 0.72 -1.7
1,130,526 + PP_0990 0.72 +1.2
1,130,526 + PP_0990 0.72 -2.6
1,130,527 - PP_0990 0.72 +0.3
1,130,527 - PP_0990 0.72 -1.2
1,130,527 - PP_0990 0.72 -0.6
1,130,527 - PP_0990 0.72 +1.4
1,130,539 + PP_0990 0.75 +0.5
1,130,539 + PP_0990 0.75 +0.3
1,130,539 + -0.3
1,130,540 - PP_0990 0.75 +0.9
1,130,540 - PP_0990 0.75 +0.6

Or see this region's nucleotide sequence