Strain Fitness in Pseudomonas putida KT2440 around PP_0987

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
1,124,248	+		PP_0986	0.20	-0.1
1,124,401	+		PP_0986	0.34	+0.6
1,124,401	+		PP_0986	0.34	-4.0
1,124,402	-		PP_0986	0.34	+0.3
1,124,427	+		PP_0986	0.36	-0.8
1,124,427	+		PP_0986	0.36	-2.8
1,124,487	-		PP_0986	0.42	+0.2
1,125,219	+				-0.1
1,125,220	-				-0.6
1,125,282	+				-0.0
1,125,282	+				-0.6
1,125,282	+				-2.6
1,125,283	-				+0.1
1,125,283	-				+0.2
1,125,283	-				-0.2
1,125,283	-				-1.1
1,125,422	+		PP_0987	0.18	-0.6
1,125,422	+		PP_0987	0.18	-2.8
1,125,422	+		PP_0987	0.18	-0.3
1,125,423	-		PP_0987	0.18	-0.6
1,125,423	-		PP_0987	0.18	-0.6
1,125,558	+		PP_0987	0.28	+0.9
1,125,558	+		PP_0987	0.28	+0.4
1,125,559	-		PP_0987	0.28	-0.3
1,125,559	-		PP_0987	0.28	-1.0
1,125,636	+		PP_0987	0.34	-1.1
1,125,637	-		PP_0987	0.34	+0.7
1,125,639	+		PP_0987	0.34	-0.1
1,125,639	+		PP_0987	0.34	-2.0
1,125,639	+		PP_0987	0.34	-0.5
1,125,639	+		PP_0987	0.34	-1.3
1,125,639	+		PP_0987	0.34	-2.3
1,125,640	-		PP_0987	0.34	+0.4
1,125,735	+		PP_0987	0.41	-1.7
1,125,735	+		PP_0987	0.41	-2.3
1,125,807	+		PP_0987	0.46	-1.6
1,125,851	+		PP_0987	0.49	-0.6
1,125,851	+		PP_0987	0.49	-0.7
1,125,851	+		PP_0987	0.49	-1.3
1,125,852	-		PP_0987	0.50	+0.4
1,125,852	-		PP_0987	0.50	-2.0
1,125,852	-		PP_0987	0.50	-2.3
1,125,852	-		PP_0987	0.50	+0.1
1,126,033	-		PP_0987	0.63	-0.6
1,126,116	+		PP_0987	0.69	+0.2
1,126,117	-		PP_0987	0.69	+1.4
1,126,117	-		PP_0987	0.69	-0.8
1,126,117	-		PP_0987	0.69	-1.0
1,126,183	-		PP_0987	0.74	+0.2
1,126,183	-		PP_0987	0.74	-1.0
1,126,183	-		PP_0987	0.74	-0.6
1,126,395	+		PP_0987	0.89	-2.0
1,126,396	-		PP_0987	0.89	+0.4
1,126,396	-		PP_0987	0.89	-0.1
1,126,396	-		PP_0987	0.89	-1.6
1,126,588	+				-0.9
1,126,618	+				+1.0
1,126,618	+				+0.0
1,126,619	-				+0.2
1,126,619	-				+2.0
1,126,619	-				-0.7
1,126,619	-				+1.1
1,126,620	+				+2.7
1,126,620	+				-3.7
1,126,620	+				-0.8
1,126,621	-				-0.4
1,126,653	+				-0.8
1,126,653	+				-3.5
1,126,654	-				-0.4
1,126,694	-				+0.0
1,126,708	+				-1.8
1,126,816	+				+0.3
1,126,817	-				-2.9
1,126,819	-				-2.2
1,126,819	-				-0.9
1,126,837	+				-0.7
1,126,837	+				-3.7
1,127,170	+		PP_0988	0.17	-2.1
1,127,171	-		PP_0988	0.17	-2.4
1,127,182	+		PP_0988	0.17	-1.5
1,127,182	+		PP_0988	0.17	-0.1
1,127,183	-		PP_0988	0.17	-1.1
1,127,210	-		PP_0988	0.18	+0.1
1,127,273	+		PP_0988	0.20	-3.2
1,127,273	+		PP_0988	0.20	+0.1
1,127,274	-		PP_0988	0.20	-2.0
1,127,275	+		PP_0988	0.20	-1.9
1,127,275	+		PP_0988	0.20	-1.9
1,127,275	+		PP_0988	0.20	+0.0
1,127,275	+		PP_0988	0.20	+0.6
1,127,275	+		PP_0988	0.20	-0.8
1,127,275	+		PP_0988	0.20	+0.5
1,127,275	+		PP_0988	0.20	-0.8
1,127,275	+		PP_0988	0.20	-2.2
1,127,275	+		PP_0988	0.20	-2.4
1,127,276	-		PP_0988	0.20	-1.8
1,127,276	-		PP_0988	0.20	-0.7
1,127,276	-		PP_0988	0.20	-0.8
1,127,276	-		PP_0988	0.20	-0.4
1,127,530	+		PP_0988	0.29	-0.9
1,127,530	+		PP_0988	0.29	-0.6
1,127,530	+		PP_0988	0.29	-1.4