Strain Fitness in Pseudomonas putida KT2440 around PP_0949

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
1,091,863	+		PP_0947	0.27	-1.2
1,092,036	+		PP_0947	0.46	+1.6
1,092,036	+		PP_0947	0.46	+1.5
1,092,145	+		PP_0947	0.58	-0.2
1,092,145	+		PP_0947	0.58	+0.4
1,092,145	+		PP_0947	0.58	+1.6
1,092,481	+				+0.2
1,092,511	+				+0.3
1,092,555	+				+1.1
1,092,556	-				-1.8
1,092,728	+		PP_0948	0.64	-4.5
1,092,918	+				-2.8
1,092,918	+				-1.6
1,092,918	+				-2.1
1,092,918	+				+0.7
1,092,918	+				-3.0
1,092,963	-		PP_0949	0.14	-2.8
1,092,963	-		PP_0949	0.14	-2.3
1,092,963	-		PP_0949	0.14	-3.1
1,092,963	-		PP_0949	0.14	-2.6
1,092,963	-		PP_0949	0.14	+0.7
1,092,966	+		PP_0949	0.14	-0.3
1,093,011	+		PP_0949	0.19	-4.0
1,093,012	-		PP_0949	0.20	-2.1
1,093,012	-		PP_0949	0.20	-0.8
1,093,012	-		PP_0949	0.20	-0.3
1,093,029	+		PP_0949	0.22	-2.5
1,093,029	+		PP_0949	0.22	-1.1
1,093,029	+		PP_0949	0.22	-3.0
1,093,030	-		PP_0949	0.22	-2.2
1,093,030	-		PP_0949	0.22	-2.5
1,093,030	-		PP_0949	0.22	-2.3
1,093,030	-		PP_0949	0.22	-0.6
1,093,030	-		PP_0949	0.22	-2.4
1,093,030	-		PP_0949	0.22	-1.3
1,093,033	+		PP_0949	0.22	-2.5
1,093,033	+		PP_0949	0.22	-2.2
1,093,034	-		PP_0949	0.22	-2.1
1,093,062	+		PP_0949	0.25	-3.3
1,093,434	+		PP_0949	0.69	-2.7
1,093,434	+		PP_0949	0.69	-3.0
1,093,435	-		PP_0949	0.69	-2.3
1,093,554	+		PP_0949	0.83	-2.4
1,093,621	-				-1.3
1,093,717	+				+0.7
1,093,718	-				-2.8
1,093,718	-				-2.9
1,093,718	-				+0.6
1,094,277	-		PP_0951	0.32	+0.5
1,094,277	-		PP_0951	0.32	+1.1
1,094,277	-		PP_0951	0.32	+1.6
1,094,277	-		PP_0951	0.32	+0.0
1,094,277	-		PP_0951	0.32	+1.3
1,094,277	-		PP_0951	0.32	-0.5
1,094,277	-		PP_0951	0.32	+0.4
1,094,277	-		PP_0951	0.32	+0.3
1,094,277	-		PP_0951	0.32	-0.3
1,094,277	-		PP_0951	0.32	-0.3
1,094,277	-		PP_0951	0.32	+0.0
1,094,277	-		PP_0951	0.32	-0.6
1,094,277	-		PP_0951	0.32	+0.5
1,094,277	-		PP_0951	0.32	+1.0
1,094,277	-		PP_0951	0.32	+2.3
1,094,277	-		PP_0951	0.32	-1.4
1,094,277	-		PP_0951	0.32	+2.5
1,094,303	-		PP_0951	0.40	+0.3
1,094,372	-		PP_0951	0.62	-1.3
1,094,433	-		PP_0951	0.82	-1.0
1,094,459	-				+1.6
1,094,459	-				+0.6
1,094,488	-				+1.9
1,094,488	-				+1.1
1,094,488	-				+0.5
1,094,515	-				+0.6