Strain Fitness in Pseudomonas putida KT2440 around PP_0940

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
1,084,128	+				-1.7
1,084,128	+				-1.6
1,084,128	+				-3.1
1,084,128	+				-1.1
1,084,128	+				-0.1
1,084,129	-				+1.1
1,084,129	-				-1.6
1,084,172	-				-2.1
1,084,172	-				+0.1
1,084,512	+				-0.2
1,084,582	-		PP_0939	0.48	-1.8
1,084,582	-		PP_0939	0.48	+0.4
1,084,613	+		PP_0939	0.51	-0.0
1,084,614	-		PP_0939	0.51	-2.8
1,084,648	-		PP_0939	0.55	+0.2
1,084,672	-		PP_0939	0.58	+0.5
1,084,672	-		PP_0939	0.58	-1.1
1,084,672	-		PP_0939	0.58	-1.7
1,084,724	+		PP_0939	0.64	+0.8
1,084,725	-		PP_0939	0.64	+0.0
1,084,791	+		PP_0939	0.72	-1.4
1,084,791	+		PP_0939	0.72	-0.7
1,084,909	+		PP_0939	0.86	-2.5
1,084,910	-		PP_0939	0.86	+0.5
1,085,015	+				-2.7
1,085,016	-				-0.8
1,085,029	+				-0.2
1,085,043	+				-0.3
1,085,044	-				+0.6
1,085,150	+				-0.7
1,085,151	-				-1.2
1,085,393	+		PP_0940	0.25	-2.9
1,085,393	+		PP_0940	0.25	-1.8
1,085,394	-		PP_0940	0.25	+0.7
1,085,394	-		PP_0940	0.25	-1.4
1,085,394	-		PP_0940	0.25	+0.6
1,085,396	-		PP_0940	0.25	-1.0
1,085,449	+		PP_0940	0.29	-0.9
1,085,596	-		PP_0940	0.39	-1.4
1,085,675	-		PP_0940	0.45	-3.3
1,086,014	+		PP_0940	0.68	-0.3
1,086,015	-		PP_0940	0.68	-1.0
1,086,015	-		PP_0940	0.68	+0.3
1,086,119	+		PP_0940	0.76	-2.3
1,086,119	+		PP_0940	0.76	-2.2
1,086,119	+		PP_0940	0.76	+0.6
1,086,119	+		PP_0940	0.76	+0.4
1,086,119	+		PP_0940	0.76	-1.1
1,086,119	+		PP_0940	0.76	+0.5
1,086,120	-		PP_0940	0.76	-0.6
1,086,175	+		PP_0940	0.80	-0.3
1,086,175	+		PP_0940	0.80	+1.1
1,086,175	+		PP_0940	0.80	+0.8
1,086,176	-		PP_0940	0.80	+1.5
1,086,179	+		PP_0940	0.80	-2.4
1,086,179	+		PP_0940	0.80	-0.7
1,086,179	+		PP_0940	0.80	-1.3
1,086,179	+		PP_0940	0.80	-1.4
1,086,180	-		PP_0940	0.80	+0.1
1,086,180	-		PP_0940	0.80	-0.7
1,086,274	+		PP_0940	0.86	-1.5
1,086,275	-		PP_0940	0.86	-2.4
1,086,373	-				-1.2
1,086,373	-				+0.6
1,086,424	+				-0.7
1,086,425	-				+0.0
1,086,425	-				-1.6
1,086,425	-				-0.8
1,086,425	-				-0.8
1,086,425	-				+0.6
1,086,567	+				-0.2
1,086,567	+				+0.1
1,086,644	+		PP_0941	0.22	+1.1
1,086,645	-		PP_0941	0.23	-3.1
1,086,645	-		PP_0941	0.23	+0.7
1,086,645	-		PP_0941	0.23	+0.9
1,086,756	+		PP_0941	0.44	-0.1
1,086,757	-		PP_0941	0.44	+0.3
1,086,952	+		PP_0941	0.81	-0.7
1,086,953	-		PP_0941	0.82	-0.6
1,087,062	+				+0.6
1,087,177	+				+1.2
1,087,301	-		PP_0942	0.11	+0.2
1,087,301	-		PP_0942	0.11	-0.2
1,087,352	+		PP_0942	0.15	-0.4
1,087,353	-		PP_0942	0.15	+0.6
1,087,362	+		PP_0942	0.16	-0.3
1,087,362	+		PP_0942	0.16	-0.5
1,087,363	-		PP_0942	0.16	-0.2
1,087,457	+		PP_0942	0.23	-0.3
1,087,458	-		PP_0942	0.23	-0.9
1,087,458	-		PP_0942	0.23	-2.6