Strain Fitness in Pseudomonas putida KT2440 around PP_0923

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
1,064,183	-				-1.8
1,064,272	-				-0.6
1,064,273	+				+0.6
1,064,280	-				-0.2
1,064,311	+				-0.3
1,064,322	-				+1.2
1,064,347	+				+0.6
1,064,348	-				-0.6
1,064,366	-				+1.7
1,064,366	-				-1.0
1,064,366	-				+0.2
1,064,366	-				+0.2
1,064,422	+		PP_0922	0.11	+1.1
1,064,423	-		PP_0922	0.11	+0.4
1,064,509	+		PP_0922	0.26	-0.7
1,064,510	-				+1.8
1,064,510	-		PP_0922	0.26	+0.5
1,064,632	+		PP_0922	0.47	+1.9
1,064,632	+		PP_0922	0.47	+0.0
1,064,633	-		PP_0922	0.47	+2.1
1,064,672	-		PP_0922	0.54	-0.6
1,064,758	+		PP_0922	0.68	-0.2
1,064,759	-				+0.8
1,064,860	+		PP_0922	0.86	-0.9
1,064,860	+		PP_0922	0.86	-0.0
1,064,860	+		PP_0922	0.86	+0.9
1,064,860	+		PP_0922	0.86	+0.9
1,064,861	-		PP_0922	0.86	+2.2
1,064,861	-		PP_0922	0.86	-0.6
1,064,942	-				-0.5
1,064,942	-				-0.3
1,064,959	-				+1.4
1,065,172	+		PP_0923	0.15	-0.4
1,065,176	+		PP_0923	0.15	-0.9
1,065,176	+		PP_0923	0.15	-0.4
1,065,232	+				+1.8
1,065,232	+		PP_0923	0.22	+1.3
1,065,300	+		PP_0923	0.31	-2.1
1,065,300	+		PP_0923	0.31	-0.1
1,065,301	-		PP_0923	0.31	-0.5
1,065,301	-		PP_0923	0.31	-0.2
1,065,392	-		PP_0923	0.43	+0.4
1,065,656	+		PP_0923	0.76	+0.9
1,065,656	+		PP_0923	0.76	-0.2
1,065,656	+		PP_0923	0.76	-0.2
1,065,657	-		PP_0923	0.76	-2.3
1,065,873	-				-0.8
1,065,975	+		PP_0924	0.17	-0.6
1,065,975	+		PP_0924	0.17	-0.7
1,065,975	+		PP_0924	0.17	-3.5
1,065,975	+		PP_0924	0.17	+1.1
1,065,976	-		PP_0924	0.17	+1.3
1,065,976	-		PP_0924	0.17	+1.0
1,065,976	-		PP_0924	0.17	-0.7
1,065,977	+		PP_0924	0.18	-0.8
1,065,977	+		PP_0924	0.18	+0.1
1,065,977	+				-0.0
1,065,978	-		PP_0924	0.18	-0.6
1,065,978	-		PP_0924	0.18	-1.2
1,065,978	-		PP_0924	0.18	-0.0
1,066,015	-		PP_0924	0.23	+1.0
1,066,079	+		PP_0924	0.31	-0.2
1,066,140	+		PP_0924	0.39	+0.9
1,066,160	+		PP_0924	0.42	-1.3
1,066,160	+		PP_0924	0.42	-0.5
1,066,166	+		PP_0924	0.43	+0.2
1,066,166	+		PP_0924	0.43	-1.4
1,066,166	+		PP_0924	0.43	+0.4
1,066,167	-		PP_0924	0.43	-1.2
1,066,167	-		PP_0924	0.43	-0.7
1,066,219	-		PP_0924	0.50	-0.1
1,066,252	-		PP_0924	0.54	+0.1
1,066,427	+		PP_0924	0.77	+0.1
1,066,427	+		PP_0924	0.77	-1.1
1,066,428	-		PP_0924	0.77	+0.6
1,066,428	-		PP_0924	0.77	+1.2
1,066,490	-		PP_0924	0.85	-0.4
1,066,490	-		PP_0924	0.85	-1.9
1,066,571	+				-0.6
1,066,571	+				+0.3
1,066,572	-				+0.7
1,066,600	+				+0.4
1,066,600	+				+1.1
1,066,601	-				-2.2
1,066,601	-				+0.3
1,066,612	+				-0.1
1,066,665	+				+0.0
1,066,665	+				+1.0
1,066,665	+				-0.3
1,066,666	-				+0.4
1,066,670	-				-0.5
1,066,670	-				-1.3
1,066,728	+				+0.4