Strain Fitness in Pseudomonas putida KT2440 around PP_0914

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
1,055,107	+		PP_0913	0.46	+0.2
1,055,107	+		PP_0913	0.46	-0.7
1,055,108	-		PP_0913	0.46	-3.2
1,055,239	+		PP_0913	0.55	-3.4
1,055,399	-		PP_0913	0.67	-3.0
1,055,399	-		PP_0913	0.67	-3.6
1,055,413	+		PP_0913	0.69	-3.4
1,055,413	+		PP_0913	0.69	-3.4
1,055,414	-		PP_0913	0.69	-1.5
1,055,509	+		PP_0913	0.76	-2.6
1,055,629	+		PP_0913	0.85	-3.1
1,055,630	-		PP_0913	0.85	-2.0
1,055,653	+		PP_0913	0.87	-2.7
1,055,653	+		PP_0913	0.87	+1.1
1,055,654	-		PP_0913	0.87	-3.8
1,055,654	-		PP_0913	0.87	-3.5
1,055,833	-				-3.2
1,055,954	+				-2.8
1,055,955	-				+1.3
1,056,066	+				-1.6
1,056,066	+				+0.3
1,056,108	+				+1.4
1,056,109	-				-1.8
1,056,109	-				-1.3
1,056,276	+		PP_0914	0.14	+0.7
1,056,422	+		PP_0914	0.21	+0.4
1,056,662	+		PP_0914	0.32	-0.6
1,056,674	+		PP_0914	0.33	+0.1
1,056,675	-		PP_0914	0.33	-0.4
1,056,699	+		PP_0914	0.34	+1.6
1,056,699	+		PP_0914	0.34	+1.9
1,056,717	+		PP_0914	0.35	+0.8
1,056,718	-		PP_0914	0.35	+0.6
1,056,718	-		PP_0914	0.35	-0.0
1,056,718	-		PP_0914	0.35	-0.1
1,056,811	-		PP_0914	0.39	+0.2
1,056,811	-		PP_0914	0.39	-3.1
1,056,811	-		PP_0914	0.39	-0.0
1,056,811	-		PP_0914	0.39	-1.1
1,056,811	-		PP_0914	0.39	-0.6
1,056,965	+		PP_0914	0.47	-0.3
1,056,966	-		PP_0914	0.47	+0.4
1,057,011	+		PP_0914	0.49	-1.1
1,057,011	+		PP_0914	0.49	+0.6
1,057,012	-		PP_0914	0.49	-0.7
1,057,012	-		PP_0914	0.49	+1.6
1,057,023	-		PP_0914	0.50	+0.2
1,057,098	-		PP_0914	0.53	-3.5
1,057,141	-		PP_0914	0.55	-1.6
1,057,160	-		PP_0914	0.56	+0.9
1,057,287	+		PP_0914	0.62	-1.2
1,057,288	-		PP_0914	0.62	+0.8
1,057,421	+		PP_0914	0.69	-2.3
1,057,422	-		PP_0914	0.69	-3.4
1,057,422	-		PP_0914	0.69	+0.7
1,057,507	-		PP_0914	0.73	-1.1
1,057,507	-		PP_0914	0.73	-0.2
1,057,557	-		PP_0914	0.75	-0.1
1,057,596	+		PP_0914	0.77	+0.5
1,057,596	+		PP_0914	0.77	+1.6
1,057,606	+		PP_0914	0.78	-2.0
1,057,607	-		PP_0914	0.78	+0.2
1,057,632	+		PP_0914	0.79	-2.9
1,057,636	-		PP_0914	0.79	-0.6
1,057,645	-		PP_0914	0.79	-0.8
1,057,674	+		PP_0914	0.81	-0.4
1,057,675	-		PP_0914	0.81	+1.0
1,057,675	-		PP_0914	0.81	-0.9
1,057,852	-		PP_0914	0.89	+0.4
1,057,930	-				-2.4
1,057,938	+				-1.1
1,057,938	+				-0.3
1,057,938	+				-1.0
1,057,939	-				-0.7
1,057,939	-				-0.6
1,057,939	-				-1.1
1,057,939	-				+1.2
1,057,939	-				-0.9
1,058,053	+				-0.6
1,058,095	+				-0.1
1,058,095	+				+1.6
1,058,095	+				-2.3
1,058,096	-				+0.6
1,058,096	-				-0.5
1,058,096	-				+0.2
1,058,096	-				+0.9
1,058,096	-				-0.6
1,058,114	+				-3.6
1,058,114	+				+0.2
1,058,122	+				-2.5
1,058,157	+				-0.2
1,058,157	+				-0.4
1,058,182	+				-3.6
1,058,183	-				+1.7
1,058,996	-				-3.1
1,059,015	-				-3.6
1,059,015	-				-0.2
1,059,031	+				-2.5
1,059,031	+				+0.4
1,059,038	+				-2.6
1,059,038	+				-3.2