Strain Fitness in Pseudomonas putida KT2440 around PP_0745

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0744 and PP_0745 are separated by 35 nucleotidesPP_0745 and PP_0746 are separated by 2 nucleotidesPP_0746 and PP_0747 are separated by 162 nucleotides PP_0744: PP_0744 - Ferrochelatase, at 862,867 to 863,883 _0744 PP_0745: PP_0745 - putative uracil permease, at 863,919 to 865,184 _0745 PP_0746: PP_0746 - Uracil phosphoribosyltransferase, at 865,187 to 865,825 _0746 PP_0747: PP_0747 - Hypoxanthine-guanine phosphoribosyltransferase, at 865,988 to 866,545 _0747 Position (kb) 863 864 865 866Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 863.865 kb on + strandat 863.865 kb on + strandat 863.865 kb on + strandat 863.865 kb on + strandat 863.922 kb on + strandat 863.922 kb on + strandat 863.922 kb on + strandat 863.922 kb on + strandat 863.923 kb on - strandat 863.923 kb on - strandat 863.923 kb on - strandat 863.923 kb on - strandat 863.923 kb on - strandat 863.923 kb on - strandat 863.982 kb on - strandat 864.248 kb on + strand, within PP_0745at 864.248 kb on + strand, within PP_0745at 864.249 kb on - strand, within PP_0745at 864.289 kb on + strand, within PP_0745at 864.290 kb on - strand, within PP_0745at 864.290 kb on - strand, within PP_0745at 864.290 kb on - strand, within PP_0745at 864.328 kb on + strand, within PP_0745at 864.328 kb on + strandat 864.328 kb on + strand, within PP_0745at 864.329 kb on - strand, within PP_0745at 864.368 kb on + strand, within PP_0745at 864.422 kb on - strand, within PP_0745at 864.422 kb on - strand, within PP_0745at 864.728 kb on - strand, within PP_0745at 864.895 kb on + strand, within PP_0745at 864.895 kb on + strand, within PP_0745at 864.895 kb on + strand, within PP_0745at 864.895 kb on + strand, within PP_0745at 864.896 kb on - strand, within PP_0745at 864.896 kb on - strand, within PP_0745at 864.896 kb on - strand, within PP_0745at 865.005 kb on + strand, within PP_0745at 865.006 kb on - strand, within PP_0745at 865.032 kb on + strand, within PP_0745at 865.033 kb on - strand, within PP_0745at 865.033 kb on - strand, within PP_0745at 865.252 kb on - strand, within PP_0746at 865.252 kb on - strand, within PP_0746at 865.488 kb on + strand, within PP_0746at 865.488 kb on + strand, within PP_0746at 865.488 kb on + strand, within PP_0746at 865.488 kb on + strand, within PP_0746at 865.489 kb on - strand, within PP_0746at 865.489 kb on - strand, within PP_0746at 865.489 kb on - strand, within PP_0746at 865.489 kb on - strand, within PP_0746at 865.605 kb on - strand, within PP_0746at 865.605 kb on - strand, within PP_0746at 865.607 kb on + strand, within PP_0746at 865.607 kb on + strand, within PP_0746at 865.608 kb on - strand, within PP_0746at 865.672 kb on - strand, within PP_0746at 865.672 kb on - strand, within PP_0746at 865.704 kb on + strand, within PP_0746at 865.705 kb on - strand, within PP_0746at 865.705 kb on - strand, within PP_0746at 865.705 kb on - strand, within PP_0746at 865.864 kb on - strandat 865.868 kb on + strandat 865.869 kb on - strandat 865.869 kb on - strandat 865.869 kb on - strandat 865.871 kb on + strandat 865.873 kb on + strandat 865.874 kb on - strandat 865.874 kb on - strandat 865.874 kb on - strandat 865.910 kb on + strandat 865.910 kb on + strandat 865.911 kb on - strandat 865.917 kb on + strandat 865.918 kb on - strandat 865.918 kb on - strandat 865.948 kb on - strandat 865.948 kb on - strandat 866.008 kb on + strandat 866.008 kb on + strandat 866.008 kb on + strandat 866.009 kb on - strandat 866.042 kb on + strandat 866.042 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-methyl-1-butanol 0.1 vol% (C)
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863,865 + +1.7
863,865 + +0.7
863,865 + +0.7
863,865 + +1.7
863,922 + -2.4
863,922 + -1.8
863,922 + -1.8
863,922 + +0.9
863,923 - -0.9
863,923 - -1.8
863,923 - -1.9
863,923 - -1.0
863,923 - -0.3
863,923 - -2.0
863,982 - -1.2
864,248 + PP_0745 0.26 -0.9
864,248 + PP_0745 0.26 -0.2
864,249 - PP_0745 0.26 +1.1
864,289 + PP_0745 0.29 -3.8
864,290 - PP_0745 0.29 -1.0
864,290 - PP_0745 0.29 -3.1
864,290 - PP_0745 0.29 -1.3
864,328 + PP_0745 0.32 -1.6
864,328 + +1.7
864,328 + PP_0745 0.32 +0.2
864,329 - PP_0745 0.32 +0.3
864,368 + PP_0745 0.35 -1.7
864,422 - PP_0745 0.40 -1.5
864,422 - PP_0745 0.40 -0.5
864,728 - PP_0745 0.64 -2.5
864,895 + PP_0745 0.77 +0.2
864,895 + PP_0745 0.77 -0.5
864,895 + PP_0745 0.77 -1.1
864,895 + PP_0745 0.77 +0.3
864,896 - PP_0745 0.77 -0.3
864,896 - PP_0745 0.77 -1.4
864,896 - PP_0745 0.77 -1.3
865,005 + PP_0745 0.86 -4.1
865,006 - PP_0745 0.86 -1.7
865,032 + PP_0745 0.88 -2.5
865,033 - PP_0745 0.88 -1.0
865,033 - PP_0745 0.88 +0.7
865,252 - PP_0746 0.10 -0.2
865,252 - PP_0746 0.10 -4.8
865,488 + PP_0746 0.47 -1.5
865,488 + PP_0746 0.47 +1.1
865,488 + PP_0746 0.47 -2.1
865,488 + PP_0746 0.47 -1.1
865,489 - PP_0746 0.47 -1.3
865,489 - PP_0746 0.47 -2.2
865,489 - PP_0746 0.47 -3.6
865,489 - PP_0746 0.47 -0.3
865,605 - PP_0746 0.65 -2.2
865,605 - PP_0746 0.65 -4.3
865,607 + PP_0746 0.66 -1.9
865,607 + PP_0746 0.66 -2.1
865,608 - PP_0746 0.66 -1.7
865,672 - PP_0746 0.76 -3.9
865,672 - PP_0746 0.76 -1.4
865,704 + PP_0746 0.81 +0.3
865,705 - PP_0746 0.81 -1.7
865,705 - PP_0746 0.81 -1.5
865,705 - PP_0746 0.81 -1.8
865,864 - -0.3
865,868 + -1.7
865,869 - -0.4
865,869 - +0.3
865,869 - -0.7
865,871 + -2.9
865,873 + -0.3
865,874 - +0.5
865,874 - -2.2
865,874 - -0.0
865,910 + +0.4
865,910 + +0.0
865,911 - -1.5
865,917 + -1.3
865,918 - +0.7
865,918 - -1.4
865,948 - -1.7
865,948 - -0.4
866,008 + -3.3
866,008 + -0.6
866,008 + -0.8
866,009 - +0.7
866,042 + +0.1
866,042 + -1.6

Or see this region's nucleotide sequence