Strain Fitness in Pseudomonas putida KT2440 around PP_0730

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0729 and PP_0730 are separated by 59 nucleotidesPP_0730 and PP_0731 are separated by 12 nucleotides PP_0729: PP_0729 - conserved protein of unknown function, at 846,009 to 847,199 _0729 PP_0730: PP_0730 - conserved protein of unknown function, at 847,259 to 848,569 _0730 PP_0731: PP_0731 - phosphatidylcholine synthase, at 848,582 to 850,417 _0731 Position (kb) 847 848 849Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 846.262 kb on + strand, within PP_0729at 846.262 kb on + strand, within PP_0729at 846.262 kb on + strand, within PP_0729at 846.262 kb on + strand, within PP_0729at 846.262 kb on + strand, within PP_0729at 846.263 kb on - strand, within PP_0729at 846.263 kb on - strand, within PP_0729at 846.263 kb on - strand, within PP_0729at 846.263 kb on - strand, within PP_0729at 846.324 kb on - strand, within PP_0729at 846.324 kb on - strand, within PP_0729at 846.344 kb on + strand, within PP_0729at 846.344 kb on + strand, within PP_0729at 846.344 kb on + strand, within PP_0729at 846.344 kb on + strand, within PP_0729at 846.344 kb on + strand, within PP_0729at 846.344 kb on + strand, within PP_0729at 846.344 kb on + strand, within PP_0729at 846.345 kb on - strand, within PP_0729at 846.345 kb on - strand, within PP_0729at 846.345 kb on - strand, within PP_0729at 846.345 kb on - strand, within PP_0729at 846.345 kb on - strand, within PP_0729at 846.346 kb on + strand, within PP_0729at 846.346 kb on + strand, within PP_0729at 846.346 kb on + strand, within PP_0729at 846.346 kb on + strand, within PP_0729at 846.346 kb on + strand, within PP_0729at 846.347 kb on - strand, within PP_0729at 846.347 kb on - strand, within PP_0729at 846.348 kb on + strand, within PP_0729at 846.349 kb on - strand, within PP_0729at 846.350 kb on - strand, within PP_0729at 846.355 kb on + strand, within PP_0729at 846.355 kb on + strand, within PP_0729at 846.356 kb on - strand, within PP_0729at 846.361 kb on - strand, within PP_0729at 846.411 kb on - strand, within PP_0729at 846.411 kb on - strand, within PP_0729at 846.434 kb on + strand, within PP_0729at 846.533 kb on + strand, within PP_0729at 846.561 kb on + strand, within PP_0729at 846.562 kb on - strand, within PP_0729at 846.562 kb on - strand, within PP_0729at 846.571 kb on - strand, within PP_0729at 846.603 kb on + strand, within PP_0729at 846.604 kb on - strand, within PP_0729at 846.627 kb on + strand, within PP_0729at 846.637 kb on - strand, within PP_0729at 846.750 kb on - strand, within PP_0729at 846.762 kb on + strand, within PP_0729at 846.762 kb on + strand, within PP_0729at 846.763 kb on - strand, within PP_0729at 846.763 kb on - strand, within PP_0729at 846.763 kb on - strand, within PP_0729at 846.766 kb on + strand, within PP_0729at 846.767 kb on - strand, within PP_0729at 846.774 kb on + strand, within PP_0729at 846.774 kb on + strand, within PP_0729at 846.774 kb on + strand, within PP_0729at 846.774 kb on + strand, within PP_0729at 846.775 kb on - strand, within PP_0729at 846.775 kb on - strand, within PP_0729at 846.778 kb on + strand, within PP_0729at 846.778 kb on + strand, within PP_0729at 846.778 kb on + strand, within PP_0729at 846.778 kb on + strand, within PP_0729at 846.778 kb on + strand, within PP_0729at 846.778 kb on + strand, within PP_0729at 846.778 kb on + strand, within PP_0729at 846.778 kb on + strand, within PP_0729at 846.778 kb on + strand, within PP_0729at 846.778 kb on + strand, within PP_0729at 846.778 kb on + strand, within PP_0729at 846.778 kb on + strand, within PP_0729at 846.779 kb on - strand, within PP_0729at 846.779 kb on - strand, within PP_0729at 846.779 kb on - strand, within PP_0729at 846.779 kb on - strand, within PP_0729at 846.781 kb on + strand, within PP_0729at 846.782 kb on - strand, within PP_0729at 846.782 kb on - strand, within PP_0729at 846.831 kb on + strand, within PP_0729at 846.831 kb on + strand, within PP_0729at 846.880 kb on - strand, within PP_0729at 846.886 kb on + strand, within PP_0729at 846.886 kb on + strand, within PP_0729at 846.942 kb on + strand, within PP_0729at 846.942 kb on + strand, within PP_0729at 846.942 kb on + strand, within PP_0729at 846.955 kb on + strand, within PP_0729at 846.955 kb on + strand, within PP_0729at 847.009 kb on - strand, within PP_0729at 847.189 kb on - strandat 847.199 kb on + strandat 847.199 kb on + strandat 847.199 kb on + strandat 847.199 kb on + strandat 847.199 kb on + strandat 847.199 kb on + strandat 847.199 kb on + strandat 847.199 kb on + strandat 847.199 kb on + strandat 847.200 kb on - strandat 847.200 kb on - strandat 847.200 kb on - strandat 847.200 kb on - strandat 847.200 kb on - strandat 847.200 kb on - strandat 847.200 kb on - strandat 847.200 kb on - strandat 847.200 kb on - strandat 847.200 kb on - strandat 847.200 kb on - strandat 847.200 kb on - strandat 847.200 kb on - strandat 847.200 kb on - strandat 847.260 kb on + strandat 847.279 kb on + strandat 847.281 kb on + strandat 847.282 kb on - strandat 847.405 kb on + strand, within PP_0730at 847.406 kb on - strand, within PP_0730at 847.407 kb on + strand, within PP_0730at 847.407 kb on + strand, within PP_0730at 847.407 kb on + strand, within PP_0730at 847.408 kb on - strandat 847.461 kb on + strand, within PP_0730at 847.461 kb on + strand, within PP_0730at 847.461 kb on + strand, within PP_0730at 847.461 kb on + strand, within PP_0730at 847.462 kb on - strand, within PP_0730at 847.462 kb on - strand, within PP_0730at 847.462 kb on - strand, within PP_0730at 847.472 kb on + strand, within PP_0730at 847.481 kb on + strand, within PP_0730at 847.481 kb on + strand, within PP_0730at 847.481 kb on + strand, within PP_0730at 847.481 kb on + strand, within PP_0730at 847.482 kb on - strand, within PP_0730at 847.482 kb on - strand, within PP_0730at 847.482 kb on - strand, within PP_0730at 847.497 kb on + strand, within PP_0730at 847.497 kb on + strand, within PP_0730at 847.511 kb on - strand, within PP_0730at 847.539 kb on - strand, within PP_0730at 847.547 kb on - strand, within PP_0730at 847.577 kb on + strand, within PP_0730at 847.577 kb on + strand, within PP_0730at 847.578 kb on - strand, within PP_0730at 847.578 kb on - strand, within PP_0730at 847.607 kb on + strand, within PP_0730at 847.644 kb on + strand, within PP_0730at 847.658 kb on + strand, within PP_0730at 847.691 kb on + strand, within PP_0730at 847.691 kb on + strand, within PP_0730at 847.731 kb on + strand, within PP_0730at 847.732 kb on - strand, within PP_0730at 847.732 kb on - strand, within PP_0730at 847.776 kb on + strand, within PP_0730at 847.776 kb on + strand, within PP_0730at 847.776 kb on + strand, within PP_0730at 847.776 kb on + strand, within PP_0730at 847.777 kb on - strand, within PP_0730at 847.777 kb on - strand, within PP_0730at 847.777 kb on - strand, within PP_0730at 847.777 kb on - strand, within PP_0730at 847.838 kb on + strand, within PP_0730at 847.839 kb on - strand, within PP_0730at 847.849 kb on + strand, within PP_0730at 847.931 kb on - strand, within PP_0730at 847.941 kb on + strand, within PP_0730at 847.941 kb on + strand, within PP_0730at 847.941 kb on + strand, within PP_0730at 847.941 kb on + strand, within PP_0730at 847.942 kb on - strand, within PP_0730at 847.942 kb on - strand, within PP_0730at 847.942 kb on - strand, within PP_0730at 847.942 kb on - strand, within PP_0730at 847.956 kb on + strand, within PP_0730at 847.984 kb on + strand, within PP_0730at 847.984 kb on + strand, within PP_0730at 847.985 kb on - strand, within PP_0730at 847.985 kb on - strand, within PP_0730at 847.985 kb on - strand, within PP_0730at 847.985 kb on - strand, within PP_0730at 848.054 kb on + strand, within PP_0730at 848.054 kb on + strand, within PP_0730at 848.054 kb on + strand, within PP_0730at 848.150 kb on + strand, within PP_0730at 848.150 kb on + strand, within PP_0730at 848.150 kb on + strand, within PP_0730at 848.151 kb on - strand, within PP_0730at 848.151 kb on - strand, within PP_0730at 848.151 kb on - strand, within PP_0730at 848.153 kb on + strand, within PP_0730at 848.153 kb on + strand, within PP_0730at 848.153 kb on + strand, within PP_0730at 848.154 kb on - strand, within PP_0730at 848.154 kb on - strand, within PP_0730at 848.174 kb on + strand, within PP_0730at 848.175 kb on - strand, within PP_0730at 848.214 kb on + strand, within PP_0730at 848.214 kb on + strand, within PP_0730at 848.215 kb on - strand, within PP_0730at 848.215 kb on - strand, within PP_0730at 848.215 kb on - strand, within PP_0730at 848.215 kb on - strand, within PP_0730at 848.215 kb on - strand, within PP_0730at 848.215 kb on - strand, within PP_0730at 848.217 kb on - strand, within PP_0730at 848.239 kb on - strand, within PP_0730at 848.285 kb on + strand, within PP_0730at 848.286 kb on - strand, within PP_0730at 848.288 kb on + strand, within PP_0730at 848.288 kb on + strand, within PP_0730at 848.288 kb on + strand, within PP_0730at 848.288 kb on + strand, within PP_0730at 848.288 kb on + strand, within PP_0730at 848.288 kb on + strand, within PP_0730at 848.289 kb on - strand, within PP_0730at 848.306 kb on - strand, within PP_0730at 848.394 kb on + strand, within PP_0730at 848.394 kb on + strand, within PP_0730at 848.394 kb on + strand, within PP_0730at 848.395 kb on - strand, within PP_0730at 848.395 kb on - strand, within PP_0730at 848.395 kb on - strand, within PP_0730at 848.395 kb on - strand, within PP_0730at 848.406 kb on + strand, within PP_0730at 848.406 kb on + strand, within PP_0730at 848.406 kb on + strand, within PP_0730at 848.407 kb on - strand, within PP_0730at 848.415 kb on + strand, within PP_0730at 848.415 kb on + strand, within PP_0730at 848.415 kb on + strand, within PP_0730at 848.415 kb on + strand, within PP_0730at 848.416 kb on - strand, within PP_0730at 848.537 kb on + strandat 848.538 kb on - strandat 848.583 kb on + strandat 848.598 kb on + strandat 848.603 kb on - strandat 848.603 kb on - strandat 848.655 kb on + strandat 848.656 kb on - strandat 848.656 kb on - strandat 848.781 kb on + strand, within PP_0731at 848.781 kb on + strand, within PP_0731at 848.781 kb on + strand, within PP_0731at 848.782 kb on - strand, within PP_0731at 848.782 kb on - strand, within PP_0731at 848.873 kb on + strandat 848.874 kb on - strand, within PP_0731at 848.913 kb on - strand, within PP_0731at 848.913 kb on - strand, within PP_0731at 848.967 kb on - strand, within PP_0731at 848.967 kb on - strand, within PP_0731at 849.009 kb on + strand, within PP_0731at 849.140 kb on + strand, within PP_0731at 849.143 kb on + strand, within PP_0731at 849.224 kb on + strand, within PP_0731at 849.302 kb on - strand, within PP_0731at 849.302 kb on - strand, within PP_0731at 849.328 kb on - strand, within PP_0731at 849.328 kb on - strand, within PP_0731at 849.371 kb on + strand, within PP_0731

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-methyl-1-butanol 0.1 vol% (C)
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846,262 + PP_0729 0.21 -0.4
846,262 + PP_0729 0.21 +1.0
846,262 + PP_0729 0.21 +1.9
846,262 + PP_0729 0.21 -0.8
846,262 + PP_0729 0.21 -0.9
846,263 - PP_0729 0.21 -0.3
846,263 - PP_0729 0.21 +1.0
846,263 - PP_0729 0.21 -0.6
846,263 - PP_0729 0.21 -0.3
846,324 - PP_0729 0.26 -1.0
846,324 - PP_0729 0.26 -0.2
846,344 + PP_0729 0.28 -1.1
846,344 + PP_0729 0.28 +1.6
846,344 + PP_0729 0.28 +0.5
846,344 + PP_0729 0.28 +1.3
846,344 + PP_0729 0.28 +0.7
846,344 + PP_0729 0.28 +0.5
846,344 + PP_0729 0.28 +0.5
846,345 - PP_0729 0.28 +1.0
846,345 - PP_0729 0.28 -1.2
846,345 - PP_0729 0.28 -0.6
846,345 - PP_0729 0.28 +0.6
846,345 - PP_0729 0.28 +0.0
846,346 + PP_0729 0.28 +0.4
846,346 + PP_0729 0.28 +0.3
846,346 + PP_0729 0.28 -0.1
846,346 + PP_0729 0.28 -0.3
846,346 + PP_0729 0.28 -0.5
846,347 - PP_0729 0.28 +1.3
846,347 - PP_0729 0.28 +0.7
846,348 + PP_0729 0.28 -1.3
846,349 - PP_0729 0.29 +1.4
846,350 - PP_0729 0.29 +0.3
846,355 + PP_0729 0.29 +0.5
846,355 + PP_0729 0.29 -1.5
846,356 - PP_0729 0.29 -1.1
846,361 - PP_0729 0.30 +0.5
846,411 - PP_0729 0.34 +1.6
846,411 - PP_0729 0.34 -0.5
846,434 + PP_0729 0.36 +0.4
846,533 + PP_0729 0.44 -0.2
846,561 + PP_0729 0.46 -0.5
846,562 - PP_0729 0.46 -3.0
846,562 - PP_0729 0.46 +1.0
846,571 - PP_0729 0.47 -1.2
846,603 + PP_0729 0.50 -0.7
846,604 - PP_0729 0.50 -0.3
846,627 + PP_0729 0.52 +1.2
846,637 - PP_0729 0.53 +1.1
846,750 - PP_0729 0.62 +1.7
846,762 + PP_0729 0.63 -0.1
846,762 + PP_0729 0.63 -1.0
846,763 - PP_0729 0.63 +0.3
846,763 - PP_0729 0.63 +0.8
846,763 - PP_0729 0.63 +0.7
846,766 + PP_0729 0.64 -0.8
846,767 - PP_0729 0.64 -0.2
846,774 + PP_0729 0.64 +0.2
846,774 + PP_0729 0.64 -1.1
846,774 + PP_0729 0.64 -0.7
846,774 + PP_0729 0.64 +0.9
846,775 - PP_0729 0.64 +0.9
846,775 - PP_0729 0.64 +0.2
846,778 + PP_0729 0.65 -0.1
846,778 + PP_0729 0.65 +0.1
846,778 + PP_0729 0.65 -0.6
846,778 + PP_0729 0.65 -1.1
846,778 + PP_0729 0.65 +0.7
846,778 + PP_0729 0.65 +0.8
846,778 + PP_0729 0.65 +0.2
846,778 + PP_0729 0.65 +0.7
846,778 + PP_0729 0.65 +0.4
846,778 + PP_0729 0.65 -0.6
846,778 + PP_0729 0.65 +0.5
846,778 + PP_0729 0.65 -1.1
846,779 - PP_0729 0.65 +1.4
846,779 - PP_0729 0.65 -0.2
846,779 - PP_0729 0.65 -0.7
846,779 - PP_0729 0.65 +0.8
846,781 + PP_0729 0.65 +1.0
846,782 - PP_0729 0.65 -2.0
846,782 - PP_0729 0.65 -3.3
846,831 + PP_0729 0.69 -0.6
846,831 + PP_0729 0.69 -0.3
846,880 - PP_0729 0.73 -2.3
846,886 + PP_0729 0.74 -0.5
846,886 + PP_0729 0.74 -0.4
846,942 + PP_0729 0.78 +0.2
846,942 + PP_0729 0.78 -0.2
846,942 + PP_0729 0.78 -1.1
846,955 + PP_0729 0.79 -0.3
846,955 + PP_0729 0.79 +0.2
847,009 - PP_0729 0.84 +0.5
847,189 - +0.1
847,199 + +1.0
847,199 + +0.1
847,199 + +0.3
847,199 + +0.7
847,199 + +1.0
847,199 + +0.7
847,199 + +1.5
847,199 + -0.6
847,199 + -0.3
847,200 - +0.2
847,200 - -0.0
847,200 - +0.0
847,200 - -0.8
847,200 - -0.7
847,200 - -1.1
847,200 - +0.6
847,200 - +0.4
847,200 - +0.7
847,200 - +0.2
847,200 - -1.7
847,200 - +0.6
847,200 - +0.7
847,200 - -0.5
847,260 + +0.6
847,279 + -0.6
847,281 + +0.1
847,282 - -0.1
847,405 + PP_0730 0.11 +0.5
847,406 - PP_0730 0.11 -0.7
847,407 + PP_0730 0.11 +0.6
847,407 + PP_0730 0.11 -0.4
847,407 + PP_0730 0.11 +0.1
847,408 - +0.4
847,461 + PP_0730 0.15 -0.1
847,461 + PP_0730 0.15 +0.9
847,461 + PP_0730 0.15 -0.3
847,461 + PP_0730 0.15 -0.3
847,462 - PP_0730 0.15 +1.3
847,462 - PP_0730 0.15 -0.1
847,462 - PP_0730 0.15 -0.4
847,472 + PP_0730 0.16 +3.0
847,481 + PP_0730 0.17 +2.1
847,481 + PP_0730 0.17 +0.7
847,481 + PP_0730 0.17 +1.2
847,481 + PP_0730 0.17 +0.6
847,482 - PP_0730 0.17 +0.3
847,482 - PP_0730 0.17 -0.1
847,482 - PP_0730 0.17 +0.3
847,497 + PP_0730 0.18 +0.4
847,497 + PP_0730 0.18 +0.8
847,511 - PP_0730 0.19 +1.4
847,539 - PP_0730 0.21 -0.2
847,547 - PP_0730 0.22 +0.9
847,577 + PP_0730 0.24 +0.5
847,577 + PP_0730 0.24 -1.3
847,578 - PP_0730 0.24 +0.4
847,578 - PP_0730 0.24 +1.3
847,607 + PP_0730 0.27 +0.5
847,644 + PP_0730 0.29 -1.5
847,658 + PP_0730 0.30 -1.4
847,691 + PP_0730 0.33 +1.6
847,691 + PP_0730 0.33 -0.3
847,731 + PP_0730 0.36 -0.7
847,732 - PP_0730 0.36 +3.7
847,732 - PP_0730 0.36 -0.2
847,776 + PP_0730 0.39 +0.7
847,776 + PP_0730 0.39 +0.5
847,776 + PP_0730 0.39 -1.2
847,776 + PP_0730 0.39 +0.9
847,777 - PP_0730 0.40 +0.5
847,777 - PP_0730 0.40 -1.1
847,777 - PP_0730 0.40 +0.1
847,777 - PP_0730 0.40 -1.2
847,838 + PP_0730 0.44 +0.9
847,839 - PP_0730 0.44 +0.9
847,849 + PP_0730 0.45 +1.4
847,931 - PP_0730 0.51 +0.4
847,941 + PP_0730 0.52 +0.3
847,941 + PP_0730 0.52 -1.0
847,941 + PP_0730 0.52 -0.4
847,941 + PP_0730 0.52 -0.6
847,942 - PP_0730 0.52 -0.2
847,942 - PP_0730 0.52 +0.1
847,942 - PP_0730 0.52 +0.6
847,942 - PP_0730 0.52 -0.3
847,956 + PP_0730 0.53 -1.2
847,984 + PP_0730 0.55 -0.3
847,984 + PP_0730 0.55 +0.6
847,985 - PP_0730 0.55 +0.3
847,985 - PP_0730 0.55 -0.9
847,985 - PP_0730 0.55 -0.3
847,985 - PP_0730 0.55 -0.8
848,054 + PP_0730 0.61 +1.2
848,054 + PP_0730 0.61 +0.3
848,054 + PP_0730 0.61 -3.0
848,150 + PP_0730 0.68 +0.2
848,150 + PP_0730 0.68 +0.2
848,150 + PP_0730 0.68 +0.7
848,151 - PP_0730 0.68 -0.0
848,151 - PP_0730 0.68 +1.2
848,151 - PP_0730 0.68 -0.6
848,153 + PP_0730 0.68 -1.1
848,153 + PP_0730 0.68 -0.0
848,153 + PP_0730 0.68 +0.8
848,154 - PP_0730 0.68 -2.5
848,154 - PP_0730 0.68 +0.3
848,174 + PP_0730 0.70 -0.7
848,175 - PP_0730 0.70 +0.5
848,214 + PP_0730 0.73 -2.7
848,214 + PP_0730 0.73 +0.5
848,215 - PP_0730 0.73 -0.1
848,215 - PP_0730 0.73 -2.8
848,215 - PP_0730 0.73 +1.1
848,215 - PP_0730 0.73 +0.8
848,215 - PP_0730 0.73 -0.1
848,215 - PP_0730 0.73 +0.7
848,217 - PP_0730 0.73 -1.0
848,239 - PP_0730 0.75 +1.1
848,285 + PP_0730 0.78 -1.2
848,286 - PP_0730 0.78 +0.6
848,288 + PP_0730 0.78 +1.0
848,288 + PP_0730 0.78 -0.4
848,288 + PP_0730 0.78 +0.3
848,288 + PP_0730 0.78 -0.3
848,288 + PP_0730 0.78 +0.6
848,288 + PP_0730 0.78 -0.2
848,289 - PP_0730 0.79 +0.2
848,306 - PP_0730 0.80 +0.5
848,394 + PP_0730 0.87 -0.6
848,394 + PP_0730 0.87 +0.8
848,394 + PP_0730 0.87 -1.4
848,395 - PP_0730 0.87 -0.9
848,395 - PP_0730 0.87 +1.0
848,395 - PP_0730 0.87 +0.7
848,395 - PP_0730 0.87 -2.2
848,406 + PP_0730 0.87 -0.6
848,406 + PP_0730 0.87 -0.7
848,406 + PP_0730 0.87 +0.2
848,407 - PP_0730 0.88 -0.9
848,415 + PP_0730 0.88 +1.2
848,415 + PP_0730 0.88 -2.1
848,415 + PP_0730 0.88 +0.1
848,415 + PP_0730 0.88 -1.2
848,416 - PP_0730 0.88 -0.6
848,537 + +1.2
848,538 - +0.3
848,583 + +0.3
848,598 + +1.2
848,603 - +0.3
848,603 - -1.5
848,655 + -1.4
848,656 - +2.1
848,656 - -0.1
848,781 + PP_0731 0.11 -3.2
848,781 + PP_0731 0.11 +0.0
848,781 + PP_0731 0.11 +0.2
848,782 - PP_0731 0.11 +0.5
848,782 - PP_0731 0.11 +1.1
848,873 + -0.6
848,874 - PP_0731 0.16 +0.3
848,913 - PP_0731 0.18 +0.3
848,913 - PP_0731 0.18 -0.5
848,967 - PP_0731 0.21 +0.9
848,967 - PP_0731 0.21 +1.1
849,009 + PP_0731 0.23 +0.2
849,140 + PP_0731 0.30 +0.7
849,143 + PP_0731 0.31 +1.7
849,224 + PP_0731 0.35 +0.9
849,302 - PP_0731 0.39 +1.3
849,302 - PP_0731 0.39 +0.0
849,328 - PP_0731 0.41 -0.5
849,328 - PP_0731 0.41 -0.5
849,371 + PP_0731 0.43 +0.2

Or see this region's nucleotide sequence