Strain Fitness in Pseudomonas putida KT2440 around PP_0725

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0723 and PP_0724 are separated by 4 nucleotidesPP_0724 and PP_0725 are separated by 4 nucleotidesPP_0725 and PP_0726 are separated by 468 nucleotides PP_0723: PP_0723 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, at 839,841 to 840,701 _0723 PP_0724: PP_0724 - Outer-membrane lipoprotein LolB, at 840,706 to 841,323 _0724 PP_0725: PP_0725 - conserved hypothetical TPR repeat protein, at 841,328 to 843,049 _0725 PP_0726: PP_0726 - Transferase, at 843,518 to 844,243 _0726 Position (kb) 841 842 843 844Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 841.376 kb on - strandat 841.413 kb on - strandat 841.513 kb on - strand, within PP_0725at 841.631 kb on - strand, within PP_0725at 841.633 kb on - strand, within PP_0725at 841.660 kb on - strand, within PP_0725at 841.660 kb on - strand, within PP_0725at 841.774 kb on - strand, within PP_0725at 841.774 kb on - strand, within PP_0725at 841.774 kb on - strand, within PP_0725at 841.881 kb on - strand, within PP_0725at 841.894 kb on - strand, within PP_0725at 842.098 kb on - strand, within PP_0725at 842.098 kb on - strand, within PP_0725at 842.278 kb on - strand, within PP_0725at 842.538 kb on - strand, within PP_0725at 842.622 kb on - strand, within PP_0725at 842.622 kb on - strand, within PP_0725at 842.635 kb on - strand, within PP_0725at 842.635 kb on - strand, within PP_0725at 842.653 kb on - strand, within PP_0725at 842.833 kb on - strand, within PP_0725at 842.833 kb on - strand, within PP_0725at 842.833 kb on - strand, within PP_0725at 842.833 kb on - strand, within PP_0725at 842.894 kb on - strandat 842.896 kb on - strandat 842.896 kb on - strandat 842.923 kb on - strandat 842.923 kb on - strandat 842.923 kb on - strandat 843.037 kb on - strandat 843.037 kb on - strandat 843.050 kb on - strandat 843.060 kb on - strandat 843.060 kb on - strandat 843.060 kb on - strandat 843.062 kb on - strandat 843.062 kb on - strandat 843.062 kb on - strandat 843.134 kb on + strandat 843.134 kb on + strandat 843.156 kb on - strandat 843.219 kb on + strandat 843.227 kb on - strandat 843.241 kb on - strandat 843.275 kb on + strandat 843.275 kb on + strandat 843.275 kb on + strandat 843.276 kb on - strandat 843.276 kb on - strandat 843.276 kb on - strandat 843.276 kb on - strandat 843.288 kb on + strandat 843.312 kb on + strandat 843.312 kb on + strandat 843.312 kb on + strandat 843.312 kb on + strandat 843.312 kb on + strandat 843.312 kb on + strandat 843.312 kb on + strandat 843.312 kb on + strandat 843.313 kb on - strandat 843.313 kb on - strandat 843.313 kb on - strandat 843.313 kb on - strandat 843.313 kb on - strandat 843.313 kb on - strandat 843.314 kb on + strandat 843.355 kb on - strandat 843.355 kb on - strandat 843.459 kb on - strandat 843.480 kb on + strandat 843.492 kb on + strandat 843.531 kb on + strandat 843.543 kb on + strandat 843.543 kb on + strandat 843.543 kb on + strandat 843.543 kb on + strandat 843.545 kb on + strandat 843.636 kb on - strand, within PP_0726at 843.741 kb on + strand, within PP_0726at 843.741 kb on + strand, within PP_0726at 843.741 kb on + strand, within PP_0726at 843.742 kb on - strandat 843.742 kb on - strand, within PP_0726at 843.742 kb on - strand, within PP_0726at 843.784 kb on + strand, within PP_0726at 843.806 kb on + strand, within PP_0726at 843.879 kb on + strand, within PP_0726at 843.892 kb on + strand, within PP_0726at 843.907 kb on + strand, within PP_0726at 843.907 kb on + strand, within PP_0726at 843.907 kb on + strand, within PP_0726at 843.908 kb on - strand, within PP_0726at 843.911 kb on + strand, within PP_0726at 843.911 kb on + strand, within PP_0726at 843.911 kb on + strand, within PP_0726at 843.912 kb on - strand, within PP_0726at 843.912 kb on - strand, within PP_0726at 843.920 kb on + strand, within PP_0726at 843.920 kb on + strand, within PP_0726at 843.920 kb on + strand, within PP_0726at 843.923 kb on + strand, within PP_0726at 843.923 kb on + strand, within PP_0726at 843.924 kb on - strand, within PP_0726at 843.924 kb on - strand, within PP_0726at 843.924 kb on - strand, within PP_0726at 843.924 kb on - strand, within PP_0726at 843.951 kb on + strand, within PP_0726at 843.951 kb on + strand, within PP_0726at 843.951 kb on + strand, within PP_0726at 843.952 kb on - strand, within PP_0726at 843.955 kb on + strand, within PP_0726at 843.955 kb on + strand, within PP_0726at 843.955 kb on + strand, within PP_0726at 843.955 kb on + strand, within PP_0726at 843.955 kb on + strand, within PP_0726at 843.956 kb on - strand, within PP_0726at 843.956 kb on - strand, within PP_0726at 843.956 kb on - strand, within PP_0726at 843.998 kb on + strand, within PP_0726at 843.998 kb on + strand, within PP_0726at 844.039 kb on - strand, within PP_0726

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-methyl-1-butanol 0.1 vol% (C)
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841,376 - -3.6
841,413 - -0.8
841,513 - PP_0725 0.11 -3.3
841,631 - PP_0725 0.18 -3.7
841,633 - PP_0725 0.18 -1.0
841,660 - PP_0725 0.19 -3.7
841,660 - PP_0725 0.19 -1.4
841,774 - PP_0725 0.26 -1.3
841,774 - PP_0725 0.26 -3.5
841,774 - PP_0725 0.26 -1.6
841,881 - PP_0725 0.32 -0.1
841,894 - PP_0725 0.33 -2.0
842,098 - PP_0725 0.45 -2.7
842,098 - PP_0725 0.45 -2.0
842,278 - PP_0725 0.55 -1.8
842,538 - PP_0725 0.70 -0.4
842,622 - PP_0725 0.75 -2.3
842,622 - PP_0725 0.75 -1.0
842,635 - PP_0725 0.76 -3.0
842,635 - PP_0725 0.76 -1.8
842,653 - PP_0725 0.77 -2.3
842,833 - PP_0725 0.87 -0.7
842,833 - PP_0725 0.87 -3.0
842,833 - PP_0725 0.87 -2.5
842,833 - PP_0725 0.87 -2.9
842,894 - -0.2
842,896 - -1.2
842,896 - -0.4
842,923 - -3.1
842,923 - -2.4
842,923 - -2.9
843,037 - -1.1
843,037 - -0.7
843,050 - -0.8
843,060 - +1.2
843,060 - -0.9
843,060 - -0.6
843,062 - -1.0
843,062 - +1.0
843,062 - +0.7
843,134 + +0.2
843,134 + +0.3
843,156 - -1.1
843,219 + +0.4
843,227 - +0.5
843,241 - +0.5
843,275 + +1.2
843,275 + +0.9
843,275 + -2.5
843,276 - -0.7
843,276 - -0.3
843,276 - -0.2
843,276 - +0.1
843,288 + +0.0
843,312 + +0.3
843,312 + -1.5
843,312 + +0.3
843,312 + +0.3
843,312 + +0.1
843,312 + -1.2
843,312 + +0.8
843,312 + +0.3
843,313 - +0.1
843,313 - +0.5
843,313 - +0.3
843,313 - +0.6
843,313 - +1.1
843,313 - +0.9
843,314 + +1.1
843,355 - -1.0
843,355 - +0.1
843,459 - -0.0
843,480 + +1.0
843,492 + +0.6
843,531 + -0.4
843,543 + +0.8
843,543 + -0.9
843,543 + +0.4
843,543 + +1.0
843,545 + +0.4
843,636 - PP_0726 0.16 +0.7
843,741 + PP_0726 0.31 +0.4
843,741 + PP_0726 0.31 -1.1
843,741 + PP_0726 0.31 +0.6
843,742 - -0.1
843,742 - PP_0726 0.31 -0.5
843,742 - PP_0726 0.31 -0.8
843,784 + PP_0726 0.37 -0.1
843,806 + PP_0726 0.40 -0.6
843,879 + PP_0726 0.50 +0.2
843,892 + PP_0726 0.52 -1.0
843,907 + PP_0726 0.54 -1.1
843,907 + PP_0726 0.54 +0.9
843,907 + PP_0726 0.54 +0.4
843,908 - PP_0726 0.54 -0.9
843,911 + PP_0726 0.54 +1.0
843,911 + PP_0726 0.54 -2.9
843,911 + PP_0726 0.54 +0.2
843,912 - PP_0726 0.54 -1.8
843,912 - PP_0726 0.54 -0.8
843,920 + PP_0726 0.55 -0.1
843,920 + PP_0726 0.55 +0.6
843,920 + PP_0726 0.55 -0.2
843,923 + PP_0726 0.56 +0.3
843,923 + PP_0726 0.56 -0.3
843,924 - PP_0726 0.56 -1.1
843,924 - PP_0726 0.56 +0.2
843,924 - PP_0726 0.56 -0.5
843,924 - PP_0726 0.56 +0.5
843,951 + PP_0726 0.60 -0.6
843,951 + PP_0726 0.60 -0.1
843,951 + PP_0726 0.60 -0.4
843,952 - PP_0726 0.60 -0.1
843,955 + PP_0726 0.60 +1.7
843,955 + PP_0726 0.60 -0.4
843,955 + PP_0726 0.60 +1.0
843,955 + PP_0726 0.60 +0.2
843,955 + PP_0726 0.60 -0.2
843,956 - PP_0726 0.60 +0.1
843,956 - PP_0726 0.60 +2.3
843,956 - PP_0726 0.60 -0.1
843,998 + PP_0726 0.66 -0.5
843,998 + PP_0726 0.66 -0.6
844,039 - PP_0726 0.72 -0.2

Or see this region's nucleotide sequence