Experiment: 3-methyl-1-butanol 0.1 vol% (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0678 and PP_0679 are separated by 71 nucleotides PP_0679 and PP_0680 are separated by 223 nucleotides PP_0680 and PP_0681 are separated by 162 nucleotides PP_0681 and PP_0682 are separated by 189 nucleotides
PP_0678: PP_0678 - conserved exported protein of unknown function, at 791,195 to 793,048
_0678
PP_0679: PP_0679 - conserved exported protein of unknown function, at 793,120 to 793,635
_0679
PP_0680: PP_0680 - ATP-dependent protease-like protein, at 793,859 to 796,297
_0680
PP_0681: PP_0681 - conserved protein of unknown function, at 796,460 to 796,798
_0681
PP_0682: PP_0682 - conserved inner membrane protein of unknown function, UPF0114 family, at 796,988 to 797,476
_0682
Position (kb) 793
794
795
796
797 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 792.891 kb on + strand at 792.891 kb on + strand at 792.891 kb on + strand at 792.891 kb on + strand at 792.892 kb on - strand at 792.892 kb on - strand at 792.924 kb on + strand at 792.924 kb on + strand at 792.925 kb on - strand at 792.925 kb on - strand at 793.059 kb on + strand at 793.060 kb on - strand at 793.121 kb on + strand at 793.121 kb on + strand at 793.121 kb on + strand at 793.121 kb on + strand at 793.122 kb on - strand at 793.132 kb on - strand at 793.136 kb on + strand at 793.136 kb on + strand at 793.136 kb on + strand at 793.137 kb on - strand at 793.137 kb on - strand at 793.137 kb on - strand at 793.137 kb on - strand at 793.137 kb on - strand at 793.257 kb on - strand, within PP_0679 at 793.257 kb on - strand, within PP_0679 at 793.276 kb on + strand, within PP_0679 at 793.295 kb on + strand, within PP_0679 at 793.295 kb on + strand, within PP_0679 at 793.295 kb on + strand, within PP_0679 at 793.295 kb on + strand, within PP_0679 at 793.296 kb on - strand, within PP_0679 at 793.296 kb on - strand, within PP_0679 at 793.296 kb on - strand, within PP_0679 at 793.296 kb on - strand, within PP_0679 at 793.296 kb on - strand, within PP_0679 at 793.385 kb on + strand, within PP_0679 at 793.386 kb on - strand, within PP_0679 at 793.467 kb on + strand, within PP_0679 at 793.608 kb on + strand at 793.608 kb on + strand at 793.609 kb on - strand at 793.609 kb on - strand at 793.777 kb on + strand at 793.777 kb on + strand at 793.777 kb on + strand at 793.777 kb on + strand at 793.778 kb on - strand at 793.778 kb on - strand at 793.778 kb on - strand at 793.830 kb on + strand at 793.831 kb on - strand at 793.831 kb on - strand at 793.847 kb on + strand at 793.847 kb on + strand at 793.939 kb on + strand at 794.037 kb on - strand at 794.045 kb on + strand at 794.045 kb on + strand at 794.045 kb on + strand at 794.046 kb on - strand at 794.046 kb on - strand at 794.046 kb on - strand at 794.142 kb on - strand, within PP_0680 at 794.142 kb on - strand, within PP_0680 at 794.282 kb on + strand, within PP_0680 at 794.327 kb on + strand, within PP_0680 at 794.328 kb on - strand, within PP_0680 at 794.328 kb on - strand, within PP_0680 at 794.328 kb on - strand, within PP_0680 at 794.328 kb on - strand, within PP_0680 at 794.328 kb on - strand, within PP_0680 at 794.384 kb on + strand, within PP_0680 at 794.666 kb on + strand, within PP_0680 at 794.667 kb on - strand, within PP_0680 at 794.698 kb on + strand, within PP_0680 at 794.698 kb on + strand, within PP_0680 at 794.699 kb on - strand, within PP_0680 at 794.699 kb on - strand, within PP_0680 at 794.699 kb on - strand, within PP_0680 at 794.769 kb on - strand, within PP_0680 at 794.841 kb on - strand, within PP_0680 at 794.867 kb on + strand, within PP_0680 at 794.868 kb on - strand, within PP_0680 at 794.891 kb on + strand, within PP_0680 at 794.891 kb on + strand, within PP_0680 at 794.891 kb on + strand, within PP_0680 at 794.891 kb on + strand, within PP_0680 at 794.891 kb on + strand at 794.891 kb on + strand, within PP_0680 at 794.892 kb on - strand, within PP_0680 at 794.892 kb on - strand, within PP_0680 at 794.892 kb on - strand, within PP_0680 at 794.892 kb on - strand at 794.892 kb on - strand, within PP_0680 at 794.892 kb on - strand, within PP_0680 at 794.893 kb on + strand, within PP_0680 at 794.893 kb on + strand, within PP_0680 at 794.893 kb on + strand, within PP_0680 at 794.894 kb on - strand, within PP_0680 at 794.894 kb on - strand, within PP_0680 at 794.894 kb on - strand, within PP_0680 at 794.988 kb on + strand, within PP_0680 at 795.137 kb on + strand, within PP_0680 at 795.137 kb on + strand, within PP_0680 at 795.137 kb on + strand, within PP_0680 at 795.138 kb on - strand, within PP_0680 at 795.138 kb on - strand, within PP_0680 at 795.138 kb on - strand, within PP_0680 at 795.141 kb on - strand, within PP_0680 at 795.141 kb on - strand, within PP_0680 at 795.141 kb on - strand, within PP_0680 at 795.141 kb on - strand, within PP_0680 at 795.141 kb on - strand, within PP_0680 at 795.320 kb on + strand, within PP_0680 at 795.320 kb on + strand, within PP_0680 at 795.320 kb on + strand, within PP_0680 at 795.320 kb on + strand, within PP_0680 at 795.320 kb on + strand, within PP_0680 at 795.320 kb on + strand, within PP_0680 at 795.321 kb on - strand, within PP_0680 at 795.321 kb on - strand, within PP_0680 at 795.652 kb on + strand, within PP_0680 at 795.652 kb on + strand, within PP_0680 at 795.653 kb on - strand, within PP_0680 at 795.741 kb on - strand, within PP_0680 at 795.795 kb on - strand, within PP_0680 at 795.795 kb on - strand, within PP_0680 at 795.801 kb on - strand, within PP_0680 at 796.086 kb on - strand at 796.360 kb on - strand at 796.382 kb on + strand at 796.383 kb on - strand at 796.392 kb on - strand at 796.392 kb on - strand at 796.683 kb on - strand, within PP_0681 at 796.776 kb on - strand at 796.852 kb on + strand at 796.852 kb on + strand at 796.853 kb on - strand at 796.927 kb on + strand at 796.928 kb on - strand at 796.944 kb on + strand at 796.944 kb on + strand at 796.945 kb on - strand at 796.945 kb on - strand at 796.945 kb on - strand at 796.962 kb on + strand at 796.963 kb on - strand at 796.997 kb on - strand at 797.015 kb on + strand at 797.015 kb on + strand at 797.015 kb on + strand at 797.016 kb on - strand at 797.016 kb on - strand at 797.016 kb on - strand at 797.045 kb on + strand, within PP_0682 at 797.045 kb on + strand, within PP_0682 at 797.046 kb on - strand, within PP_0682
Per-strain Table
Position Strand Gene LocusTag Fraction 3-methyl-1-butanol 0.1 vol% (C) remove 792,891 + -1.0 792,891 + -1.3 792,891 + +1.2 792,891 + -0.2 792,892 - -0.5 792,892 - +0.0 792,924 + -3.1 792,924 + -0.7 792,925 - +0.8 792,925 - -0.2 793,059 + -0.6 793,060 - +0.5 793,121 + +2.2 793,121 + +0.0 793,121 + +0.3 793,121 + +0.6 793,122 - -1.9 793,132 - +1.0 793,136 + -1.1 793,136 + +0.4 793,136 + +0.3 793,137 - +0.1 793,137 - +0.3 793,137 - -2.8 793,137 - -0.3 793,137 - -0.1 793,257 - PP_0679 0.27 +0.3 793,257 - PP_0679 0.27 -2.6 793,276 + PP_0679 0.30 +0.1 793,295 + PP_0679 0.34 +0.6 793,295 + PP_0679 0.34 +0.5 793,295 + PP_0679 0.34 +1.4 793,295 + PP_0679 0.34 +0.4 793,296 - PP_0679 0.34 -0.1 793,296 - PP_0679 0.34 -1.1 793,296 - PP_0679 0.34 -0.5 793,296 - PP_0679 0.34 -0.8 793,296 - PP_0679 0.34 +0.7 793,385 + PP_0679 0.51 +2.1 793,386 - PP_0679 0.52 -3.5 793,467 + PP_0679 0.67 -0.3 793,608 + -0.6 793,608 + +1.3 793,609 - +0.2 793,609 - -0.6 793,777 + -1.2 793,777 + -1.0 793,777 + +0.6 793,777 + -1.8 793,778 - -1.1 793,778 - -1.3 793,778 - -1.3 793,830 + +0.0 793,831 - -1.8 793,831 - -0.6 793,847 + -1.5 793,847 + +0.4 793,939 + -0.5 794,037 - -1.9 794,045 + -0.4 794,045 + -1.1 794,045 + -3.1 794,046 - -1.6 794,046 - -0.8 794,046 - -2.0 794,142 - PP_0680 0.12 -3.3 794,142 - PP_0680 0.12 -2.4 794,282 + PP_0680 0.17 -0.6 794,327 + PP_0680 0.19 -0.9 794,328 - PP_0680 0.19 -0.2 794,328 - PP_0680 0.19 -0.4 794,328 - PP_0680 0.19 -1.6 794,328 - PP_0680 0.19 -2.4 794,328 - PP_0680 0.19 -0.1 794,384 + PP_0680 0.22 -2.0 794,666 + PP_0680 0.33 -2.9 794,667 - PP_0680 0.33 -1.3 794,698 + PP_0680 0.34 -1.9 794,698 + PP_0680 0.34 -2.8 794,699 - PP_0680 0.34 -4.1 794,699 - PP_0680 0.34 -2.8 794,699 - PP_0680 0.34 -2.8 794,769 - PP_0680 0.37 -2.1 794,841 - PP_0680 0.40 -0.9 794,867 + PP_0680 0.41 -1.4 794,868 - PP_0680 0.41 -1.5 794,891 + PP_0680 0.42 -3.2 794,891 + PP_0680 0.42 -1.1 794,891 + PP_0680 0.42 -2.6 794,891 + PP_0680 0.42 -1.4 794,891 + -0.6 794,891 + PP_0680 0.42 -2.1 794,892 - PP_0680 0.42 -1.1 794,892 - PP_0680 0.42 -2.9 794,892 - PP_0680 0.42 -0.6 794,892 - -0.8 794,892 - PP_0680 0.42 -1.0 794,892 - PP_0680 0.42 -1.0 794,893 + PP_0680 0.42 -0.8 794,893 + PP_0680 0.42 -3.4 794,893 + PP_0680 0.42 -1.7 794,894 - PP_0680 0.42 -4.4 794,894 - PP_0680 0.42 -1.6 794,894 - PP_0680 0.42 -1.2 794,988 + PP_0680 0.46 +1.8 795,137 + PP_0680 0.52 -0.2 795,137 + PP_0680 0.52 -3.7 795,137 + PP_0680 0.52 +0.4 795,138 - PP_0680 0.52 +0.5 795,138 - PP_0680 0.52 +0.2 795,138 - PP_0680 0.52 -1.7 795,141 - PP_0680 0.53 -2.3 795,141 - PP_0680 0.53 -2.6 795,141 - PP_0680 0.53 -1.2 795,141 - PP_0680 0.53 -1.2 795,141 - PP_0680 0.53 +0.1 795,320 + PP_0680 0.60 -1.6 795,320 + PP_0680 0.60 -1.7 795,320 + PP_0680 0.60 -0.6 795,320 + PP_0680 0.60 -1.9 795,320 + PP_0680 0.60 -0.6 795,320 + PP_0680 0.60 -2.0 795,321 - PP_0680 0.60 -0.8 795,321 - PP_0680 0.60 -3.1 795,652 + PP_0680 0.74 -2.0 795,652 + PP_0680 0.74 -1.0 795,653 - PP_0680 0.74 -0.8 795,741 - PP_0680 0.77 -2.1 795,795 - PP_0680 0.79 -3.2 795,795 - PP_0680 0.79 -1.3 795,801 - PP_0680 0.80 -1.5 796,086 - -1.4 796,360 - -1.7 796,382 + +0.8 796,383 - -1.0 796,392 - +0.1 796,392 - -1.8 796,683 - PP_0681 0.66 +0.0 796,776 - -1.1 796,852 + +1.2 796,852 + +0.7 796,853 - -0.9 796,927 + -3.9 796,928 - +0.4 796,944 + -0.1 796,944 + +0.8 796,945 - -2.8 796,945 - +0.6 796,945 - -1.5 796,962 + +0.4 796,963 - -1.6 796,997 - -0.2 797,015 + +1.4 797,015 + -1.0 797,015 + -0.2 797,016 - +0.3 797,016 - +1.0 797,016 - +0.2 797,045 + PP_0682 0.12 -1.2 797,045 + PP_0682 0.12 -1.2 797,046 - PP_0682 0.12 -0.3
Or see this region's nucleotide sequence