Strain Fitness in Pseudomonas putida KT2440 around PP_0672

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0671 and PP_0672 are separated by 249 nucleotidesPP_0672 and PP_0673 are separated by 221 nucleotidesPP_0673 and PP_0674 are separated by 304 nucleotides PP_0671: PP_0671 - serine hydroxymethyltransferase, at 780,592 to 781,845 _0671 PP_0672: PP_0672 - Sensory box protein, at 782,095 to 785,925 _0672 PP_0673: PP_0673 - conserved protein of unknown function, at 786,147 to 786,578 _0673 PP_0674: PP_0674 - ADP/ATP ratio sensor and inhibitor of translation, at 786,883 to 788,550 _0674 Position (kb) 782 783 784 785 786Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 781.910 kb on - strandat 782.074 kb on + strandat 782.375 kb on + strandat 782.375 kb on + strandat 782.376 kb on - strandat 782.560 kb on + strand, within PP_0672at 782.561 kb on - strand, within PP_0672at 782.561 kb on - strand, within PP_0672at 782.561 kb on - strand, within PP_0672at 782.816 kb on + strand, within PP_0672at 782.820 kb on - strand, within PP_0672at 782.820 kb on - strand, within PP_0672at 782.820 kb on - strand, within PP_0672at 782.909 kb on + strand, within PP_0672at 782.909 kb on + strand, within PP_0672at 782.910 kb on - strand, within PP_0672at 782.948 kb on + strand, within PP_0672at 782.948 kb on + strand, within PP_0672at 782.949 kb on - strand, within PP_0672at 783.387 kb on + strand, within PP_0672at 783.399 kb on - strand, within PP_0672at 783.399 kb on - strand, within PP_0672at 783.401 kb on + strand, within PP_0672at 783.402 kb on - strand, within PP_0672at 783.467 kb on + strand, within PP_0672at 783.468 kb on - strand, within PP_0672at 783.468 kb on - strand, within PP_0672at 783.468 kb on - strand, within PP_0672at 783.468 kb on - strand, within PP_0672at 783.468 kb on - strand, within PP_0672at 783.468 kb on - strand, within PP_0672at 783.468 kb on - strand, within PP_0672at 783.524 kb on + strand, within PP_0672at 783.599 kb on + strand, within PP_0672at 783.599 kb on + strand, within PP_0672at 783.599 kb on + strand, within PP_0672at 783.599 kb on + strand, within PP_0672at 783.600 kb on - strand, within PP_0672at 783.674 kb on + strand, within PP_0672at 783.712 kb on + strand, within PP_0672at 783.714 kb on + strand, within PP_0672at 783.715 kb on - strand, within PP_0672at 783.716 kb on + strand, within PP_0672at 783.717 kb on - strand, within PP_0672at 783.717 kb on - strand, within PP_0672at 783.763 kb on + strand, within PP_0672at 783.940 kb on + strand, within PP_0672at 783.940 kb on + strand, within PP_0672at 784.010 kb on + strand, within PP_0672at 784.010 kb on + strand, within PP_0672at 784.010 kb on + strand, within PP_0672at 784.010 kb on + strand, within PP_0672at 784.010 kb on + strand, within PP_0672at 784.011 kb on - strand, within PP_0672at 784.100 kb on - strand, within PP_0672at 784.100 kb on - strand, within PP_0672at 784.115 kb on + strand, within PP_0672at 784.115 kb on + strand, within PP_0672at 784.115 kb on + strand, within PP_0672at 784.115 kb on + strand, within PP_0672at 784.115 kb on + strand, within PP_0672at 784.116 kb on - strand, within PP_0672at 784.201 kb on + strand, within PP_0672at 784.202 kb on - strand, within PP_0672at 784.202 kb on - strand, within PP_0672at 784.307 kb on + strand, within PP_0672at 784.308 kb on - strand, within PP_0672at 784.308 kb on - strand, within PP_0672at 784.403 kb on + strand, within PP_0672at 784.404 kb on - strand, within PP_0672at 784.479 kb on - strand, within PP_0672at 784.544 kb on + strand, within PP_0672at 784.544 kb on + strand, within PP_0672at 784.544 kb on + strand, within PP_0672at 784.544 kb on + strand, within PP_0672at 784.545 kb on - strand, within PP_0672at 784.545 kb on - strand, within PP_0672at 784.567 kb on + strand, within PP_0672at 784.600 kb on + strand, within PP_0672at 784.662 kb on - strand, within PP_0672at 785.213 kb on - strand, within PP_0672at 785.213 kb on - strand, within PP_0672at 785.375 kb on + strand, within PP_0672at 785.376 kb on - strand, within PP_0672at 785.378 kb on + strand, within PP_0672at 785.378 kb on + strand, within PP_0672at 785.379 kb on - strand, within PP_0672at 785.379 kb on - strand, within PP_0672at 785.412 kb on + strand, within PP_0672at 785.444 kb on + strand, within PP_0672at 785.445 kb on - strand, within PP_0672at 785.445 kb on - strand, within PP_0672at 785.445 kb on - strand, within PP_0672at 785.445 kb on - strand, within PP_0672at 785.445 kb on - strand, within PP_0672at 785.558 kb on - strandat 785.913 kb on + strandat 785.913 kb on + strandat 785.913 kb on + strandat 785.913 kb on + strandat 786.015 kb on + strandat 786.015 kb on + strandat 786.015 kb on + strandat 786.015 kb on + strandat 786.016 kb on - strandat 786.016 kb on - strandat 786.016 kb on - strandat 786.017 kb on + strandat 786.017 kb on + strandat 786.017 kb on + strandat 786.017 kb on + strandat 786.018 kb on - strandat 786.018 kb on - strandat 786.018 kb on - strandat 786.018 kb on - strandat 786.018 kb on - strandat 786.042 kb on - strandat 786.042 kb on - strandat 786.056 kb on + strandat 786.262 kb on + strand, within PP_0673at 786.263 kb on - strand, within PP_0673at 786.263 kb on - strand, within PP_0673at 786.754 kb on + strandat 786.754 kb on + strandat 786.754 kb on + strandat 786.754 kb on + strandat 786.755 kb on - strandat 786.755 kb on - strandat 786.755 kb on - strandat 786.755 kb on - strandat 786.809 kb on - strandat 786.857 kb on + strandat 786.857 kb on + strandat 786.858 kb on - strandat 786.858 kb on - strandat 786.858 kb on - strandat 786.861 kb on + strandat 786.862 kb on - strandat 786.869 kb on + strandat 786.892 kb on + strandat 786.893 kb on - strandat 786.893 kb on - strandat 786.893 kb on - strandat 786.893 kb on - strandat 786.893 kb on - strandat 786.898 kb on + strandat 786.898 kb on + strandat 786.898 kb on + strandat 786.898 kb on + strandat 786.899 kb on - strandat 786.899 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-methyl-1-butanol 0.1 vol% (C)
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781,910 - +0.2
782,074 + -0.5
782,375 + +0.1
782,375 + -0.3
782,376 - +1.0
782,560 + PP_0672 0.12 +0.2
782,561 - PP_0672 0.12 -1.3
782,561 - PP_0672 0.12 +0.1
782,561 - PP_0672 0.12 -1.3
782,816 + PP_0672 0.19 +0.5
782,820 - PP_0672 0.19 -1.0
782,820 - PP_0672 0.19 -2.9
782,820 - PP_0672 0.19 -2.4
782,909 + PP_0672 0.21 +0.3
782,909 + PP_0672 0.21 +1.1
782,910 - PP_0672 0.21 -0.5
782,948 + PP_0672 0.22 +0.3
782,948 + PP_0672 0.22 -0.6
782,949 - PP_0672 0.22 +0.8
783,387 + PP_0672 0.34 +0.2
783,399 - PP_0672 0.34 +1.0
783,399 - PP_0672 0.34 +0.7
783,401 + PP_0672 0.34 +0.8
783,402 - PP_0672 0.34 +0.3
783,467 + PP_0672 0.36 -0.1
783,468 - PP_0672 0.36 +1.0
783,468 - PP_0672 0.36 +2.1
783,468 - PP_0672 0.36 +0.3
783,468 - PP_0672 0.36 +0.3
783,468 - PP_0672 0.36 +0.9
783,468 - PP_0672 0.36 +0.7
783,468 - PP_0672 0.36 +0.7
783,524 + PP_0672 0.37 +0.6
783,599 + PP_0672 0.39 -0.1
783,599 + PP_0672 0.39 +2.3
783,599 + PP_0672 0.39 +0.1
783,599 + PP_0672 0.39 +0.2
783,600 - PP_0672 0.39 +1.0
783,674 + PP_0672 0.41 +0.1
783,712 + PP_0672 0.42 -0.1
783,714 + PP_0672 0.42 -1.9
783,715 - PP_0672 0.42 +0.5
783,716 + PP_0672 0.42 +0.5
783,717 - PP_0672 0.42 +1.0
783,717 - PP_0672 0.42 +0.7
783,763 + PP_0672 0.44 +1.8
783,940 + PP_0672 0.48 +0.9
783,940 + PP_0672 0.48 +0.2
784,010 + PP_0672 0.50 +0.9
784,010 + PP_0672 0.50 +0.5
784,010 + PP_0672 0.50 +0.4
784,010 + PP_0672 0.50 +1.1
784,010 + PP_0672 0.50 +0.4
784,011 - PP_0672 0.50 +1.3
784,100 - PP_0672 0.52 -0.4
784,100 - PP_0672 0.52 +1.0
784,115 + PP_0672 0.53 +0.5
784,115 + PP_0672 0.53 +0.4
784,115 + PP_0672 0.53 -0.2
784,115 + PP_0672 0.53 +0.7
784,115 + PP_0672 0.53 +0.4
784,116 - PP_0672 0.53 -0.1
784,201 + PP_0672 0.55 +0.6
784,202 - PP_0672 0.55 -1.0
784,202 - PP_0672 0.55 +0.4
784,307 + PP_0672 0.58 -1.0
784,308 - PP_0672 0.58 +1.5
784,308 - PP_0672 0.58 -1.1
784,403 + PP_0672 0.60 +1.3
784,404 - PP_0672 0.60 +0.5
784,479 - PP_0672 0.62 +0.8
784,544 + PP_0672 0.64 +0.9
784,544 + PP_0672 0.64 -0.4
784,544 + PP_0672 0.64 +2.5
784,544 + PP_0672 0.64 +1.1
784,545 - PP_0672 0.64 +0.0
784,545 - PP_0672 0.64 +0.6
784,567 + PP_0672 0.65 -0.1
784,600 + PP_0672 0.65 +0.4
784,662 - PP_0672 0.67 -0.0
785,213 - PP_0672 0.81 +0.5
785,213 - PP_0672 0.81 +0.8
785,375 + PP_0672 0.86 +0.4
785,376 - PP_0672 0.86 +0.8
785,378 + PP_0672 0.86 +0.7
785,378 + PP_0672 0.86 +1.2
785,379 - PP_0672 0.86 -0.3
785,379 - PP_0672 0.86 +0.7
785,412 + PP_0672 0.87 +1.4
785,444 + PP_0672 0.87 +0.3
785,445 - PP_0672 0.87 +0.3
785,445 - PP_0672 0.87 -0.4
785,445 - PP_0672 0.87 +0.8
785,445 - PP_0672 0.87 +0.8
785,445 - PP_0672 0.87 +0.9
785,558 - +0.6
785,913 + -0.4
785,913 + +0.1
785,913 + -2.2
785,913 + +0.1
786,015 + -0.3
786,015 + +1.1
786,015 + -0.4
786,015 + -0.6
786,016 - +1.0
786,016 - -1.1
786,016 - +1.3
786,017 + +0.0
786,017 + +0.3
786,017 + -0.3
786,017 + -1.4
786,018 - +1.4
786,018 - -3.5
786,018 - -1.2
786,018 - -2.7
786,018 - +1.3
786,042 - -0.2
786,042 - -1.5
786,056 + -0.1
786,262 + PP_0673 0.27 -0.5
786,263 - PP_0673 0.27 -0.9
786,263 - PP_0673 0.27 -2.0
786,754 + -0.3
786,754 + -0.9
786,754 + -2.0
786,754 + -0.5
786,755 - +2.2
786,755 - -3.2
786,755 - -0.7
786,755 - -0.6
786,809 - +0.2
786,857 + -0.7
786,857 + -1.1
786,858 - -0.3
786,858 - -1.1
786,858 - -2.1
786,861 + -0.0
786,862 - -2.4
786,869 + -2.3
786,892 + -0.8
786,893 - -2.3
786,893 - -0.4
786,893 - -1.4
786,893 - -3.2
786,893 - -2.2
786,898 + -1.4
786,898 + -1.8
786,898 + -0.4
786,898 + -0.7
786,899 - -3.4
786,899 - -2.4

Or see this region's nucleotide sequence