Experiment: 3-methyl-1-butanol 0.1 vol% (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0596 and PP_0597 are separated by 73 nucleotides PP_0597 and PP_16SD are separated by 750 nucleotides
PP_0596: PP_0596 - Omega-amino acid--pyruvate aminotransferase, at 694,160 to 695,506
_0596
PP_0597: PP_0597 - methylmalonate-semialdehyde dehydrogenase, at 695,580 to 697,073
_0597
PP_16SD: PP_16SD - 16S ribosomal RNA, at 697,824 to 699,345
_16SD
Position (kb) 695
696
697
698 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 694.616 kb on + strand, within PP_0596 at 694.617 kb on - strand, within PP_0596 at 694.639 kb on + strand, within PP_0596 at 694.716 kb on + strand, within PP_0596 at 694.716 kb on + strand, within PP_0596 at 694.716 kb on + strand, within PP_0596 at 694.716 kb on + strand, within PP_0596 at 694.716 kb on + strand, within PP_0596 at 694.717 kb on - strand, within PP_0596 at 694.717 kb on - strand, within PP_0596 at 694.881 kb on - strand, within PP_0596 at 695.079 kb on - strand, within PP_0596 at 695.111 kb on + strand, within PP_0596 at 695.112 kb on - strand, within PP_0596 at 695.136 kb on - strand, within PP_0596 at 695.136 kb on - strand, within PP_0596 at 695.141 kb on + strand, within PP_0596 at 695.142 kb on - strand, within PP_0596 at 695.142 kb on - strand, within PP_0596 at 695.278 kb on + strand, within PP_0596 at 695.297 kb on + strand, within PP_0596 at 695.297 kb on + strand, within PP_0596 at 695.298 kb on - strand, within PP_0596 at 695.357 kb on + strand, within PP_0596 at 695.358 kb on - strand, within PP_0596 at 695.393 kb on + strand at 695.393 kb on + strand at 695.393 kb on + strand at 695.393 kb on + strand at 695.393 kb on + strand at 695.393 kb on + strand at 695.393 kb on + strand at 695.394 kb on - strand at 695.394 kb on - strand at 695.394 kb on - strand at 695.397 kb on + strand at 695.440 kb on + strand at 695.531 kb on + strand at 695.532 kb on - strand at 695.532 kb on - strand at 695.532 kb on - strand at 695.565 kb on + strand at 695.619 kb on - strand at 695.891 kb on + strand, within PP_0597 at 696.054 kb on + strand, within PP_0597 at 696.054 kb on + strand, within PP_0597 at 696.054 kb on + strand, within PP_0597 at 696.126 kb on + strand, within PP_0597 at 696.126 kb on + strand, within PP_0597 at 696.126 kb on + strand, within PP_0597 at 696.127 kb on - strand, within PP_0597 at 696.127 kb on - strand, within PP_0597 at 696.127 kb on - strand, within PP_0597 at 696.127 kb on - strand, within PP_0597 at 696.270 kb on + strand, within PP_0597 at 696.270 kb on + strand, within PP_0597 at 696.271 kb on - strand, within PP_0597 at 696.271 kb on - strand, within PP_0597 at 696.276 kb on + strand, within PP_0597 at 696.277 kb on - strand, within PP_0597 at 696.277 kb on - strand, within PP_0597 at 696.277 kb on - strand, within PP_0597 at 696.307 kb on + strand, within PP_0597 at 696.307 kb on + strand, within PP_0597 at 696.308 kb on - strand, within PP_0597 at 696.651 kb on - strand, within PP_0597 at 696.663 kb on + strand, within PP_0597 at 696.663 kb on + strand, within PP_0597 at 696.663 kb on + strand, within PP_0597 at 696.664 kb on - strand, within PP_0597 at 696.714 kb on + strand, within PP_0597 at 696.714 kb on + strand, within PP_0597 at 696.714 kb on + strand, within PP_0597 at 696.714 kb on + strand, within PP_0597 at 696.715 kb on - strand, within PP_0597 at 696.715 kb on - strand, within PP_0597 at 696.715 kb on - strand, within PP_0597 at 696.715 kb on - strand, within PP_0597 at 696.715 kb on - strand, within PP_0597 at 696.716 kb on + strand, within PP_0597 at 696.717 kb on - strand, within PP_0597 at 696.717 kb on - strand, within PP_0597 at 696.761 kb on + strand, within PP_0597 at 696.761 kb on + strand, within PP_0597 at 696.762 kb on - strand, within PP_0597 at 696.801 kb on + strand, within PP_0597 at 696.802 kb on - strand, within PP_0597 at 696.818 kb on + strand, within PP_0597 at 696.818 kb on + strand, within PP_0597 at 696.819 kb on - strand, within PP_0597 at 696.819 kb on - strand, within PP_0597 at 696.819 kb on - strand, within PP_0597 at 696.819 kb on - strand, within PP_0597 at 696.824 kb on + strand, within PP_0597 at 696.825 kb on - strand, within PP_0597 at 696.825 kb on - strand, within PP_0597 at 696.875 kb on + strand, within PP_0597 at 696.875 kb on + strand, within PP_0597 at 696.876 kb on - strand, within PP_0597 at 696.876 kb on - strand, within PP_0597 at 696.893 kb on - strand, within PP_0597 at 696.893 kb on - strand, within PP_0597 at 696.966 kb on + strand at 696.967 kb on - strand at 696.990 kb on + strand at 696.990 kb on + strand at 696.991 kb on - strand at 696.991 kb on - strand at 697.072 kb on - strand at 697.072 kb on - strand at 697.080 kb on + strand at 697.081 kb on - strand at 697.353 kb on + strand at 697.353 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 3-methyl-1-butanol 0.1 vol% (C) remove 694,616 + PP_0596 0.34 -0.5 694,617 - PP_0596 0.34 -1.0 694,639 + PP_0596 0.36 +0.4 694,716 + PP_0596 0.41 +0.2 694,716 + PP_0596 0.41 -0.4 694,716 + PP_0596 0.41 -0.4 694,716 + PP_0596 0.41 -0.0 694,716 + PP_0596 0.41 -0.1 694,717 - PP_0596 0.41 +0.8 694,717 - PP_0596 0.41 +1.2 694,881 - PP_0596 0.54 -0.8 695,079 - PP_0596 0.68 -0.1 695,111 + PP_0596 0.71 -1.0 695,112 - PP_0596 0.71 +1.8 695,136 - PP_0596 0.72 -2.2 695,136 - PP_0596 0.72 +0.6 695,141 + PP_0596 0.73 -1.3 695,142 - PP_0596 0.73 +0.0 695,142 - PP_0596 0.73 +0.2 695,278 + PP_0596 0.83 +0.8 695,297 + PP_0596 0.84 -0.8 695,297 + PP_0596 0.84 +0.9 695,298 - PP_0596 0.84 -0.5 695,357 + PP_0596 0.89 -1.3 695,358 - PP_0596 0.89 +0.4 695,393 + -1.2 695,393 + +1.9 695,393 + -0.9 695,393 + -1.9 695,393 + +1.0 695,393 + -0.4 695,393 + +0.6 695,394 - +0.6 695,394 - -0.9 695,394 - +0.9 695,397 + -0.9 695,440 + -0.3 695,531 + -2.3 695,532 - +0.4 695,532 - +0.9 695,532 - +0.4 695,565 + +0.8 695,619 - -0.4 695,891 + PP_0597 0.21 -2.2 696,054 + PP_0597 0.32 -1.0 696,054 + PP_0597 0.32 +1.8 696,054 + PP_0597 0.32 +0.2 696,126 + PP_0597 0.37 +0.8 696,126 + PP_0597 0.37 -0.1 696,126 + PP_0597 0.37 -2.4 696,127 - PP_0597 0.37 -0.1 696,127 - PP_0597 0.37 +0.4 696,127 - PP_0597 0.37 -1.7 696,127 - PP_0597 0.37 +0.2 696,270 + PP_0597 0.46 +0.3 696,270 + PP_0597 0.46 -0.8 696,271 - PP_0597 0.46 -1.8 696,271 - PP_0597 0.46 -0.4 696,276 + PP_0597 0.47 -1.9 696,277 - PP_0597 0.47 -0.0 696,277 - PP_0597 0.47 -0.0 696,277 - PP_0597 0.47 -0.4 696,307 + PP_0597 0.49 -0.3 696,307 + PP_0597 0.49 -0.9 696,308 - PP_0597 0.49 -0.2 696,651 - PP_0597 0.72 +1.4 696,663 + PP_0597 0.72 -0.9 696,663 + PP_0597 0.72 +0.1 696,663 + PP_0597 0.72 +0.7 696,664 - PP_0597 0.73 +0.2 696,714 + PP_0597 0.76 -1.3 696,714 + PP_0597 0.76 -1.5 696,714 + PP_0597 0.76 -0.2 696,714 + PP_0597 0.76 +0.6 696,715 - PP_0597 0.76 +0.6 696,715 - PP_0597 0.76 -0.8 696,715 - PP_0597 0.76 +0.2 696,715 - PP_0597 0.76 -0.2 696,715 - PP_0597 0.76 -1.5 696,716 + PP_0597 0.76 -0.4 696,717 - PP_0597 0.76 -1.1 696,717 - PP_0597 0.76 -0.3 696,761 + PP_0597 0.79 -1.6 696,761 + PP_0597 0.79 +0.3 696,762 - PP_0597 0.79 -0.0 696,801 + PP_0597 0.82 -0.5 696,802 - PP_0597 0.82 -0.2 696,818 + PP_0597 0.83 -0.5 696,818 + PP_0597 0.83 -1.0 696,819 - PP_0597 0.83 -0.4 696,819 - PP_0597 0.83 +1.8 696,819 - PP_0597 0.83 -0.5 696,819 - PP_0597 0.83 -0.3 696,824 + PP_0597 0.83 -0.1 696,825 - PP_0597 0.83 -1.8 696,825 - PP_0597 0.83 -0.8 696,875 + PP_0597 0.87 +0.1 696,875 + PP_0597 0.87 -1.9 696,876 - PP_0597 0.87 -1.0 696,876 - PP_0597 0.87 +1.6 696,893 - PP_0597 0.88 +0.0 696,893 - PP_0597 0.88 +1.5 696,966 + +1.5 696,967 - -1.2 696,990 + -1.4 696,990 + -0.7 696,991 - -0.1 696,991 - -0.2 697,072 - +2.4 697,072 - -0.2 697,080 + +1.7 697,081 - -2.8 697,353 + +0.6 697,353 + +1.3
Or see this region's nucleotide sequence