Strain Fitness in Pseudomonas putida KT2440 around PP_0582

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0581 and PP_0582 are separated by 96 nucleotidesPP_0582 and PP_0583 are separated by 89 nucleotidesPP_0583 and PP_0584 are separated by 68 nucleotides PP_0581: PP_0581 - 3-oxoacyl-(Acyl-carrier-protein) reductase, at 677,644 to 679,017 _0581 PP_0582: PP_0582 - Thiolase family protein, at 679,114 to 680,391 _0582 PP_0583: PP_0583 - Transcriptional regulator, AraC family, at 680,481 to 681,260 _0583 PP_0584: PP_0584 - Methyl-accepting chemotaxis transducer, at 681,329 to 683,272 _0584 Position (kb) 679 680 681Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 678.193 kb on + strand, within PP_0581at 678.193 kb on + strandat 678.193 kb on + strand, within PP_0581at 678.194 kb on - strand, within PP_0581at 678.263 kb on - strand, within PP_0581at 678.416 kb on - strand, within PP_0581at 678.500 kb on + strand, within PP_0581at 678.500 kb on + strand, within PP_0581at 678.500 kb on + strand, within PP_0581at 678.500 kb on + strand, within PP_0581at 678.500 kb on + strand, within PP_0581at 678.501 kb on - strand, within PP_0581at 678.501 kb on - strand, within PP_0581at 678.628 kb on + strand, within PP_0581at 678.628 kb on + strand, within PP_0581at 678.628 kb on + strand, within PP_0581at 678.629 kb on - strand, within PP_0581at 678.629 kb on - strand, within PP_0581at 678.629 kb on - strand, within PP_0581at 678.629 kb on - strand, within PP_0581at 678.629 kb on - strand, within PP_0581at 678.629 kb on - strand, within PP_0581at 678.656 kb on - strand, within PP_0581at 678.725 kb on - strand, within PP_0581at 678.725 kb on - strand, within PP_0581at 678.797 kb on + strand, within PP_0581at 678.797 kb on + strand, within PP_0581at 678.797 kb on + strand, within PP_0581at 678.797 kb on + strand, within PP_0581at 678.797 kb on + strand, within PP_0581at 678.798 kb on - strand, within PP_0581at 678.798 kb on - strand, within PP_0581at 678.798 kb on - strand, within PP_0581at 678.798 kb on - strand, within PP_0581at 678.798 kb on - strand, within PP_0581at 678.798 kb on - strand, within PP_0581at 678.798 kb on - strand, within PP_0581at 678.799 kb on + strand, within PP_0581at 678.799 kb on + strand, within PP_0581at 678.799 kb on + strand, within PP_0581at 678.799 kb on + strand, within PP_0581at 678.799 kb on + strand, within PP_0581at 678.799 kb on + strand, within PP_0581at 678.800 kb on - strand, within PP_0581at 678.800 kb on - strand, within PP_0581at 678.800 kb on - strand, within PP_0581at 678.800 kb on - strand, within PP_0581at 678.800 kb on - strandat 678.984 kb on - strandat 678.984 kb on - strandat 679.074 kb on + strandat 679.074 kb on + strandat 679.074 kb on + strandat 679.074 kb on + strandat 679.074 kb on + strandat 679.075 kb on - strandat 679.075 kb on - strandat 679.183 kb on + strandat 679.183 kb on + strandat 679.184 kb on - strandat 679.366 kb on + strand, within PP_0582at 679.366 kb on + strand, within PP_0582at 679.366 kb on + strand, within PP_0582at 679.367 kb on - strandat 679.452 kb on + strand, within PP_0582at 679.515 kb on + strand, within PP_0582at 679.515 kb on + strand, within PP_0582at 679.515 kb on + strand, within PP_0582at 679.515 kb on + strand, within PP_0582at 679.516 kb on - strand, within PP_0582at 679.517 kb on + strand, within PP_0582at 679.517 kb on + strand, within PP_0582at 679.517 kb on + strand, within PP_0582at 679.517 kb on + strand, within PP_0582at 679.517 kb on + strand, within PP_0582at 679.517 kb on + strand, within PP_0582at 679.517 kb on + strand, within PP_0582at 679.517 kb on + strand, within PP_0582at 679.517 kb on + strand, within PP_0582at 679.517 kb on + strand, within PP_0582at 679.518 kb on - strand, within PP_0582at 679.518 kb on - strand, within PP_0582at 679.518 kb on - strand, within PP_0582at 679.518 kb on - strand, within PP_0582at 679.518 kb on - strand, within PP_0582at 679.518 kb on - strand, within PP_0582at 679.518 kb on - strand, within PP_0582at 679.518 kb on - strand, within PP_0582at 679.518 kb on - strand, within PP_0582at 679.518 kb on - strand, within PP_0582at 679.518 kb on - strand, within PP_0582at 679.614 kb on + strand, within PP_0582at 679.714 kb on - strand, within PP_0582at 679.714 kb on - strand, within PP_0582at 679.739 kb on - strand, within PP_0582at 679.884 kb on + strand, within PP_0582at 679.885 kb on - strand, within PP_0582at 679.972 kb on + strand, within PP_0582at 679.973 kb on - strand, within PP_0582at 680.045 kb on - strand, within PP_0582at 680.098 kb on + strand, within PP_0582at 680.101 kb on + strand, within PP_0582at 680.102 kb on - strand, within PP_0582at 680.102 kb on - strand, within PP_0582at 680.102 kb on - strand, within PP_0582at 680.167 kb on + strand, within PP_0582at 680.168 kb on - strand, within PP_0582at 680.394 kb on + strandat 680.395 kb on - strandat 680.447 kb on + strandat 680.447 kb on + strandat 680.448 kb on - strandat 680.467 kb on + strandat 680.541 kb on + strandat 680.614 kb on - strand, within PP_0583at 680.629 kb on + strand, within PP_0583at 680.630 kb on - strand, within PP_0583at 680.640 kb on + strand, within PP_0583at 680.641 kb on - strand, within PP_0583at 680.641 kb on - strand, within PP_0583at 680.641 kb on - strand, within PP_0583at 680.641 kb on - strand, within PP_0583at 680.641 kb on - strand, within PP_0583at 680.658 kb on + strand, within PP_0583at 680.659 kb on - strand, within PP_0583at 681.186 kb on + strandat 681.186 kb on + strandat 681.187 kb on - strandat 681.205 kb on - strandat 681.205 kb on - strandat 681.226 kb on + strandat 681.227 kb on - strandat 681.227 kb on - strandat 681.227 kb on - strandat 681.356 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-methyl-1-butanol 0.1 vol% (C)
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678,193 + PP_0581 0.40 -1.2
678,193 + +0.2
678,193 + PP_0581 0.40 +2.3
678,194 - PP_0581 0.40 +0.4
678,263 - PP_0581 0.45 -1.0
678,416 - PP_0581 0.56 +0.8
678,500 + PP_0581 0.62 -1.3
678,500 + PP_0581 0.62 +0.8
678,500 + PP_0581 0.62 -0.1
678,500 + PP_0581 0.62 +1.2
678,500 + PP_0581 0.62 -0.6
678,501 - PP_0581 0.62 +0.3
678,501 - PP_0581 0.62 +0.7
678,628 + PP_0581 0.72 -0.0
678,628 + PP_0581 0.72 -0.6
678,628 + PP_0581 0.72 -0.1
678,629 - PP_0581 0.72 -0.2
678,629 - PP_0581 0.72 +0.5
678,629 - PP_0581 0.72 +0.9
678,629 - PP_0581 0.72 -2.1
678,629 - PP_0581 0.72 -0.7
678,629 - PP_0581 0.72 -1.1
678,656 - PP_0581 0.74 -0.4
678,725 - PP_0581 0.79 +1.2
678,725 - PP_0581 0.79 +0.2
678,797 + PP_0581 0.84 -1.2
678,797 + PP_0581 0.84 -0.8
678,797 + PP_0581 0.84 -2.4
678,797 + PP_0581 0.84 -1.1
678,797 + PP_0581 0.84 -1.4
678,798 - PP_0581 0.84 -0.1
678,798 - PP_0581 0.84 +0.3
678,798 - PP_0581 0.84 +1.1
678,798 - PP_0581 0.84 +1.0
678,798 - PP_0581 0.84 +0.2
678,798 - PP_0581 0.84 -1.1
678,798 - PP_0581 0.84 -1.3
678,799 + PP_0581 0.84 +0.7
678,799 + PP_0581 0.84 +0.4
678,799 + PP_0581 0.84 -1.3
678,799 + PP_0581 0.84 +0.3
678,799 + PP_0581 0.84 -1.1
678,799 + PP_0581 0.84 +0.3
678,800 - PP_0581 0.84 +1.0
678,800 - PP_0581 0.84 +1.0
678,800 - PP_0581 0.84 -1.0
678,800 - PP_0581 0.84 +0.6
678,800 - +0.2
678,984 - -0.4
678,984 - -0.4
679,074 + -1.2
679,074 + -0.3
679,074 + +0.1
679,074 + +0.4
679,074 + -0.1
679,075 - +0.7
679,075 - +0.2
679,183 + +1.4
679,183 + +0.6
679,184 - +0.4
679,366 + PP_0582 0.20 +0.5
679,366 + PP_0582 0.20 +0.4
679,366 + PP_0582 0.20 +0.4
679,367 - -0.6
679,452 + PP_0582 0.26 -0.4
679,515 + PP_0582 0.31 +0.2
679,515 + PP_0582 0.31 -0.3
679,515 + PP_0582 0.31 -0.3
679,515 + PP_0582 0.31 +1.3
679,516 - PP_0582 0.31 -2.8
679,517 + PP_0582 0.32 -1.1
679,517 + PP_0582 0.32 -1.0
679,517 + PP_0582 0.32 +0.8
679,517 + PP_0582 0.32 -0.0
679,517 + PP_0582 0.32 +0.4
679,517 + PP_0582 0.32 +0.5
679,517 + PP_0582 0.32 -0.4
679,517 + PP_0582 0.32 +1.1
679,517 + PP_0582 0.32 +1.0
679,517 + PP_0582 0.32 -1.8
679,518 - PP_0582 0.32 -1.3
679,518 - PP_0582 0.32 +0.9
679,518 - PP_0582 0.32 -0.7
679,518 - PP_0582 0.32 +0.8
679,518 - PP_0582 0.32 -0.8
679,518 - PP_0582 0.32 -0.6
679,518 - PP_0582 0.32 -0.4
679,518 - PP_0582 0.32 +0.5
679,518 - PP_0582 0.32 -0.4
679,518 - PP_0582 0.32 +0.2
679,518 - PP_0582 0.32 -0.4
679,614 + PP_0582 0.39 -0.9
679,714 - PP_0582 0.47 -0.0
679,714 - PP_0582 0.47 +0.3
679,739 - PP_0582 0.49 -0.0
679,884 + PP_0582 0.60 +0.4
679,885 - PP_0582 0.60 +0.2
679,972 + PP_0582 0.67 -0.3
679,973 - PP_0582 0.67 -0.4
680,045 - PP_0582 0.73 +0.1
680,098 + PP_0582 0.77 -0.2
680,101 + PP_0582 0.77 -0.1
680,102 - PP_0582 0.77 -0.6
680,102 - PP_0582 0.77 -0.3
680,102 - PP_0582 0.77 +0.1
680,167 + PP_0582 0.82 +0.8
680,168 - PP_0582 0.82 -1.6
680,394 + +1.4
680,395 - -0.2
680,447 + +0.6
680,447 + -1.9
680,448 - -0.6
680,467 + -0.4
680,541 + +0.0
680,614 - PP_0583 0.17 -0.5
680,629 + PP_0583 0.19 -0.8
680,630 - PP_0583 0.19 -0.1
680,640 + PP_0583 0.20 +0.4
680,641 - PP_0583 0.21 +1.2
680,641 - PP_0583 0.21 -0.5
680,641 - PP_0583 0.21 -3.4
680,641 - PP_0583 0.21 +0.6
680,641 - PP_0583 0.21 -0.2
680,658 + PP_0583 0.23 +0.3
680,659 - PP_0583 0.23 +1.1
681,186 + +0.2
681,186 + -1.1
681,187 - -1.0
681,205 - +0.0
681,205 - -0.2
681,226 + -0.3
681,227 - -1.8
681,227 - +0.7
681,227 - -0.6
681,356 - -1.9

Or see this region's nucleotide sequence