Experiment: 3-methyl-1-butanol 0.1 vol% (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0544 and PP_0545 are separated by 227 nucleotides PP_0545 and PP_0546 are separated by 254 nucleotides
PP_0544: PP_0544 - Ethanolamine transporter, at 630,244 to 631,692
_0544
PP_0545: PP_0545 - aldehyde dehydrogenase, at 631,920 to 633,440
_0545
PP_0546: PP_0546 - sigma-54 dependent transcriptional regulator, at 633,695 to 635,710
_0546
Position (kb) 631
632
633
634 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 631.013 kb on + strand, within PP_0544 at 631.130 kb on - strand, within PP_0544 at 631.232 kb on + strand, within PP_0544 at 631.233 kb on - strand at 631.244 kb on + strand, within PP_0544 at 631.244 kb on + strand, within PP_0544 at 631.244 kb on + strand, within PP_0544 at 631.244 kb on + strand, within PP_0544 at 631.245 kb on - strand, within PP_0544 at 631.394 kb on + strand, within PP_0544 at 631.457 kb on + strand, within PP_0544 at 631.457 kb on + strand at 631.458 kb on - strand, within PP_0544 at 631.458 kb on - strand, within PP_0544 at 631.535 kb on + strand, within PP_0544 at 631.554 kb on - strand at 631.554 kb on - strand at 631.580 kb on - strand at 631.623 kb on - strand at 631.692 kb on + strand at 631.692 kb on + strand at 631.850 kb on + strand at 631.850 kb on + strand at 631.851 kb on - strand at 631.884 kb on + strand at 631.922 kb on - strand at 631.949 kb on - strand at 631.949 kb on - strand at 631.978 kb on + strand at 631.978 kb on + strand at 632.057 kb on - strand at 632.065 kb on + strand at 632.066 kb on - strand at 632.066 kb on - strand at 632.290 kb on + strand, within PP_0545 at 632.290 kb on + strand, within PP_0545 at 632.290 kb on + strand, within PP_0545 at 632.290 kb on + strand, within PP_0545 at 632.291 kb on - strand, within PP_0545 at 632.378 kb on - strand, within PP_0545 at 632.378 kb on - strand, within PP_0545 at 632.378 kb on - strand, within PP_0545 at 632.717 kb on + strand, within PP_0545 at 632.785 kb on + strand, within PP_0545 at 632.796 kb on + strand, within PP_0545 at 632.797 kb on - strand, within PP_0545 at 632.844 kb on + strand, within PP_0545 at 632.845 kb on - strand, within PP_0545 at 632.996 kb on - strand, within PP_0545 at 633.281 kb on + strand, within PP_0545 at 633.281 kb on + strand, within PP_0545 at 633.281 kb on + strand, within PP_0545 at 633.282 kb on - strand, within PP_0545 at 633.326 kb on + strand at 633.356 kb on + strand at 633.356 kb on + strand at 633.356 kb on + strand at 633.357 kb on - strand at 633.357 kb on - strand at 633.376 kb on + strand at 633.377 kb on - strand at 633.377 kb on - strand at 633.377 kb on - strand at 633.377 kb on - strand at 633.377 kb on - strand at 633.385 kb on + strand at 633.434 kb on - strand at 633.456 kb on + strand at 633.456 kb on + strand at 633.675 kb on - strand at 633.689 kb on - strand at 633.736 kb on + strand at 633.815 kb on + strand at 633.816 kb on - strand at 634.252 kb on - strand, within PP_0546 at 634.319 kb on + strand, within PP_0546 at 634.319 kb on + strand, within PP_0546 at 634.320 kb on - strand, within PP_0546 at 634.320 kb on - strand, within PP_0546
Per-strain Table
Position Strand Gene LocusTag Fraction 3-methyl-1-butanol 0.1 vol% (C) remove 631,013 + PP_0544 0.53 +1.0 631,130 - PP_0544 0.61 -0.2 631,232 + PP_0544 0.68 -0.2 631,233 - -0.5 631,244 + PP_0544 0.69 +0.4 631,244 + PP_0544 0.69 +0.6 631,244 + PP_0544 0.69 +0.4 631,244 + PP_0544 0.69 +0.1 631,245 - PP_0544 0.69 +0.5 631,394 + PP_0544 0.79 +0.8 631,457 + PP_0544 0.84 -1.7 631,457 + -1.5 631,458 - PP_0544 0.84 -0.4 631,458 - PP_0544 0.84 +0.5 631,535 + PP_0544 0.89 -0.8 631,554 - +1.0 631,554 - +0.4 631,580 - +1.5 631,623 - +0.2 631,692 + +0.0 631,692 + +0.5 631,850 + +0.8 631,850 + -0.9 631,851 - +0.2 631,884 + +0.6 631,922 - -0.5 631,949 - +0.5 631,949 - -0.5 631,978 + -0.1 631,978 + +0.8 632,057 - -1.7 632,065 + +1.5 632,066 - -0.7 632,066 - +1.3 632,290 + PP_0545 0.24 -0.3 632,290 + PP_0545 0.24 -1.2 632,290 + PP_0545 0.24 +0.5 632,290 + PP_0545 0.24 -0.8 632,291 - PP_0545 0.24 -0.8 632,378 - PP_0545 0.30 -1.4 632,378 - PP_0545 0.30 +0.4 632,378 - PP_0545 0.30 -1.1 632,717 + PP_0545 0.52 -0.6 632,785 + PP_0545 0.57 -0.6 632,796 + PP_0545 0.58 -1.9 632,797 - PP_0545 0.58 -1.0 632,844 + PP_0545 0.61 -0.3 632,845 - PP_0545 0.61 +0.7 632,996 - PP_0545 0.71 -1.3 633,281 + PP_0545 0.89 +1.5 633,281 + PP_0545 0.89 +1.0 633,281 + PP_0545 0.89 -0.8 633,282 - PP_0545 0.90 -1.4 633,326 + -0.7 633,356 + -0.1 633,356 + -1.0 633,356 + +0.6 633,357 - +1.1 633,357 - +3.7 633,376 + -0.4 633,377 - -3.5 633,377 - -0.7 633,377 - +1.1 633,377 - -2.9 633,377 - +1.2 633,385 + -0.5 633,434 - -1.8 633,456 + -1.3 633,456 + -0.1 633,675 - -2.4 633,689 - -0.7 633,736 + +1.0 633,815 + +2.2 633,816 - -0.4 634,252 - PP_0546 0.28 -1.3 634,319 + PP_0546 0.31 +0.2 634,319 + PP_0546 0.31 -0.2 634,320 - PP_0546 0.31 -0.5 634,320 - PP_0546 0.31 +0.6
Or see this region's nucleotide sequence