Strain Fitness in Pseudomonas putida KT2440 around PP_0426

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0424 and PP_0425 are separated by 190 nucleotidesPP_0425 and PP_0426 are separated by 76 nucleotidesPP_0426 and PP_0427 are separated by 10 nucleotidesPP_0427 and PP_0428 are separated by 65 nucleotides PP_0424: PP_0424 - DNA-binding transcriptional dual regulator, at 512,709 to 513,353 _0424 PP_0425: PP_0425 - conserved protein of unknown function, at 513,544 to 513,966 _0425 PP_0426: PP_0426 - conserved membrane protein of unknown function, at 514,043 to 515,083 _0426 PP_0427: PP_0427 - 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase, at 515,094 to 515,741 _0427 PP_0428: PP_0428 - aminoacyl-adenylate hydrolase/purine nucleoside phosphoramidase, at 515,807 to 516,145 _0428 Position (kb) 514 515 516Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 513.043 kb on + strandat 513.043 kb on + strand, within PP_0424at 513.043 kb on + strand, within PP_0424at 513.129 kb on + strand, within PP_0424at 513.130 kb on - strand, within PP_0424at 513.130 kb on - strand, within PP_0424at 513.263 kb on + strand, within PP_0424at 513.264 kb on - strand, within PP_0424at 513.280 kb on + strand, within PP_0424at 513.300 kb on + strandat 513.300 kb on + strandat 513.301 kb on - strandat 513.301 kb on - strandat 513.371 kb on + strandat 513.380 kb on + strandat 513.381 kb on - strandat 513.433 kb on + strandat 513.434 kb on - strandat 513.444 kb on - strandat 513.459 kb on - strandat 513.461 kb on + strandat 513.504 kb on + strandat 513.504 kb on + strandat 513.504 kb on + strandat 513.505 kb on - strandat 513.505 kb on - strandat 513.505 kb on - strandat 513.556 kb on - strandat 513.556 kb on - strandat 513.556 kb on - strandat 513.792 kb on + strand, within PP_0425at 513.793 kb on - strand, within PP_0425at 513.793 kb on - strand, within PP_0425at 513.889 kb on + strand, within PP_0425at 513.890 kb on - strand, within PP_0425at 513.933 kb on + strandat 513.933 kb on + strandat 513.934 kb on - strandat 513.943 kb on + strandat 513.944 kb on - strandat 513.953 kb on + strandat 513.953 kb on + strandat 513.953 kb on + strandat 514.150 kb on + strand, within PP_0426at 514.151 kb on - strand, within PP_0426at 514.212 kb on + strand, within PP_0426at 514.213 kb on - strand, within PP_0426at 514.213 kb on - strand, within PP_0426at 514.213 kb on - strand, within PP_0426at 514.213 kb on - strand, within PP_0426at 514.221 kb on + strand, within PP_0426at 514.231 kb on - strand, within PP_0426at 514.320 kb on + strand, within PP_0426at 514.320 kb on + strand, within PP_0426at 514.320 kb on + strand, within PP_0426at 514.320 kb on + strand, within PP_0426at 514.320 kb on + strand, within PP_0426at 514.321 kb on - strand, within PP_0426at 514.321 kb on - strand, within PP_0426at 514.321 kb on - strand, within PP_0426at 514.410 kb on + strand, within PP_0426at 514.411 kb on - strand, within PP_0426at 514.434 kb on - strand, within PP_0426at 514.604 kb on + strand, within PP_0426at 514.604 kb on + strand, within PP_0426at 514.604 kb on + strand, within PP_0426at 514.605 kb on - strand, within PP_0426at 514.659 kb on + strand, within PP_0426at 514.659 kb on + strand, within PP_0426at 514.660 kb on - strand, within PP_0426at 514.660 kb on - strand, within PP_0426at 514.660 kb on - strand, within PP_0426at 514.665 kb on + strand, within PP_0426at 514.665 kb on + strand, within PP_0426at 514.665 kb on + strand, within PP_0426at 514.665 kb on + strandat 514.665 kb on + strand, within PP_0426at 514.665 kb on + strand, within PP_0426at 514.665 kb on + strand, within PP_0426at 514.665 kb on + strand, within PP_0426at 514.665 kb on + strand, within PP_0426at 514.665 kb on + strand, within PP_0426at 514.666 kb on - strand, within PP_0426at 514.666 kb on - strand, within PP_0426at 514.666 kb on - strand, within PP_0426at 514.666 kb on - strand, within PP_0426at 514.666 kb on - strand, within PP_0426at 514.666 kb on - strand, within PP_0426at 514.668 kb on + strand, within PP_0426at 514.668 kb on + strand, within PP_0426at 514.668 kb on + strand, within PP_0426at 514.668 kb on + strand, within PP_0426at 514.669 kb on - strand, within PP_0426at 514.677 kb on + strand, within PP_0426at 514.760 kb on + strand, within PP_0426at 514.837 kb on + strand, within PP_0426at 514.837 kb on + strand, within PP_0426at 514.839 kb on + strand, within PP_0426at 514.839 kb on + strand, within PP_0426at 514.839 kb on + strand, within PP_0426at 514.839 kb on + strand, within PP_0426at 514.839 kb on + strand, within PP_0426at 514.839 kb on + strand, within PP_0426at 514.840 kb on - strand, within PP_0426at 514.840 kb on - strand, within PP_0426at 514.840 kb on - strand, within PP_0426at 514.840 kb on - strand, within PP_0426at 514.938 kb on + strand, within PP_0426at 514.938 kb on + strand, within PP_0426at 514.938 kb on + strand, within PP_0426at 514.939 kb on - strand, within PP_0426at 514.939 kb on - strand, within PP_0426at 514.939 kb on - strand, within PP_0426at 515.723 kb on - strandat 515.774 kb on + strandat 515.782 kb on + strandat 515.851 kb on + strand, within PP_0428at 515.851 kb on + strand, within PP_0428at 515.851 kb on + strand, within PP_0428at 515.851 kb on + strand, within PP_0428at 515.851 kb on + strand, within PP_0428at 515.852 kb on - strand, within PP_0428at 515.852 kb on - strand, within PP_0428at 515.852 kb on - strand, within PP_0428at 515.852 kb on - strand, within PP_0428at 515.863 kb on - strand, within PP_0428

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-methyl-1-butanol 0.1 vol% (C)
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513,043 + +3.4
513,043 + PP_0424 0.52 -1.1
513,043 + PP_0424 0.52 +0.7
513,129 + PP_0424 0.65 -0.1
513,130 - PP_0424 0.65 -1.6
513,130 - PP_0424 0.65 +0.4
513,263 + PP_0424 0.86 -3.7
513,264 - PP_0424 0.86 +0.3
513,280 + PP_0424 0.89 -1.2
513,300 + +0.7
513,300 + -0.3
513,301 - +0.5
513,301 - -0.7
513,371 + +0.2
513,380 + -0.0
513,381 - -1.6
513,433 + +0.5
513,434 - -0.6
513,444 - +1.2
513,459 - -1.6
513,461 + +0.1
513,504 + +0.8
513,504 + +1.0
513,504 + -0.2
513,505 - +0.5
513,505 - -0.3
513,505 - -0.7
513,556 - +0.2
513,556 - -1.1
513,556 - -0.4
513,792 + PP_0425 0.59 +0.9
513,793 - PP_0425 0.59 -0.5
513,793 - PP_0425 0.59 -1.8
513,889 + PP_0425 0.82 +1.4
513,890 - PP_0425 0.82 +1.0
513,933 + +1.3
513,933 + +0.2
513,934 - +1.5
513,943 + -1.0
513,944 - +0.5
513,953 + -0.5
513,953 + +0.5
513,953 + +0.3
514,150 + PP_0426 0.10 +1.0
514,151 - PP_0426 0.10 +0.9
514,212 + PP_0426 0.16 +0.4
514,213 - PP_0426 0.16 +0.8
514,213 - PP_0426 0.16 -1.1
514,213 - PP_0426 0.16 -0.2
514,213 - PP_0426 0.16 +1.3
514,221 + PP_0426 0.17 -0.3
514,231 - PP_0426 0.18 -2.4
514,320 + PP_0426 0.27 +0.7
514,320 + PP_0426 0.27 +0.4
514,320 + PP_0426 0.27 +0.9
514,320 + PP_0426 0.27 +0.6
514,320 + PP_0426 0.27 +0.4
514,321 - PP_0426 0.27 +1.7
514,321 - PP_0426 0.27 -0.1
514,321 - PP_0426 0.27 -0.5
514,410 + PP_0426 0.35 +0.3
514,411 - PP_0426 0.35 +0.7
514,434 - PP_0426 0.38 -0.6
514,604 + PP_0426 0.54 +0.7
514,604 + PP_0426 0.54 -0.3
514,604 + PP_0426 0.54 +0.7
514,605 - PP_0426 0.54 +1.4
514,659 + PP_0426 0.59 -0.4
514,659 + PP_0426 0.59 -0.3
514,660 - PP_0426 0.59 +1.8
514,660 - PP_0426 0.59 +1.8
514,660 - PP_0426 0.59 +0.6
514,665 + PP_0426 0.60 +0.3
514,665 + PP_0426 0.60 +1.1
514,665 + PP_0426 0.60 -0.1
514,665 + -0.7
514,665 + PP_0426 0.60 +1.3
514,665 + PP_0426 0.60 -0.6
514,665 + PP_0426 0.60 +1.3
514,665 + PP_0426 0.60 -0.1
514,665 + PP_0426 0.60 +0.5
514,665 + PP_0426 0.60 -0.7
514,666 - PP_0426 0.60 -0.2
514,666 - PP_0426 0.60 -0.3
514,666 - PP_0426 0.60 +0.8
514,666 - PP_0426 0.60 +2.7
514,666 - PP_0426 0.60 -0.5
514,666 - PP_0426 0.60 +1.3
514,668 + PP_0426 0.60 +1.3
514,668 + PP_0426 0.60 +0.4
514,668 + PP_0426 0.60 +1.3
514,668 + PP_0426 0.60 -0.3
514,669 - PP_0426 0.60 -0.5
514,677 + PP_0426 0.61 -0.6
514,760 + PP_0426 0.69 -0.4
514,837 + PP_0426 0.76 +1.6
514,837 + PP_0426 0.76 -0.6
514,839 + PP_0426 0.76 +0.8
514,839 + PP_0426 0.76 +0.1
514,839 + PP_0426 0.76 +0.4
514,839 + PP_0426 0.76 -0.6
514,839 + PP_0426 0.76 +0.1
514,839 + PP_0426 0.76 -1.6
514,840 - PP_0426 0.77 +0.5
514,840 - PP_0426 0.77 -0.2
514,840 - PP_0426 0.77 +0.6
514,840 - PP_0426 0.77 +0.6
514,938 + PP_0426 0.86 +0.8
514,938 + PP_0426 0.86 -0.5
514,938 + PP_0426 0.86 -0.4
514,939 - PP_0426 0.86 +1.0
514,939 - PP_0426 0.86 -2.1
514,939 - PP_0426 0.86 +0.7
515,723 - +2.4
515,774 + +0.3
515,782 + -2.1
515,851 + PP_0428 0.13 -0.4
515,851 + PP_0428 0.13 -1.8
515,851 + PP_0428 0.13 -1.8
515,851 + PP_0428 0.13 -1.3
515,851 + PP_0428 0.13 +0.5
515,852 - PP_0428 0.13 -3.9
515,852 - PP_0428 0.13 +1.0
515,852 - PP_0428 0.13 -1.3
515,852 - PP_0428 0.13 +0.2
515,863 - PP_0428 0.17 -0.7

Or see this region's nucleotide sequence