Strain Fitness in Pseudomonas putida KT2440 around PP_0421

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_0418 and PP_0420 are separated by 367 nucleotidesPP_0420 and PP_0421 are separated by 9 nucleotidesPP_0421 and PP_0422 overlap by 4 nucleotidesPP_0422 and PP_0423 are separated by 147 nucleotides PP_0418: PP_0418 - Esterase EstP, at 507,121 to 509,010 _0418 PP_0420: PP_0420 - aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex, at 509,378 to 509,971 _0420 PP_0421: PP_0421 - Anthranilate phosphoribosyltransferase, at 509,981 to 511,030 _0421 PP_0422: PP_0422 - Indole-3-glycerol phosphate synthase, at 511,027 to 511,860 _0422 PP_0423: PP_0423 - conserved protein of unknown function, at 512,008 to 512,712 _0423 Position (kb) 509 510 511 512Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 509.036 kb on + strandat 509.108 kb on - strandat 509.108 kb on - strandat 509.115 kb on + strandat 509.115 kb on + strandat 509.115 kb on + strandat 509.116 kb on - strandat 509.116 kb on - strandat 509.116 kb on - strandat 509.116 kb on - strandat 509.140 kb on + strandat 509.140 kb on + strandat 509.140 kb on + strandat 509.141 kb on - strandat 509.155 kb on + strandat 509.155 kb on + strandat 509.156 kb on - strandat 509.156 kb on - strandat 509.156 kb on - strandat 509.168 kb on + strandat 509.168 kb on + strandat 509.168 kb on + strandat 509.169 kb on - strandat 509.205 kb on + strandat 509.246 kb on + strandat 509.247 kb on - strandat 509.247 kb on - strandat 509.356 kb on + strandat 509.371 kb on + strandat 509.382 kb on + strandat 509.399 kb on + strandat 509.399 kb on + strandat 509.415 kb on - strandat 509.415 kb on - strandat 509.429 kb on + strandat 509.524 kb on - strand, within PP_0420at 509.524 kb on - strand, within PP_0420at 509.610 kb on + strand, within PP_0420at 509.610 kb on + strand, within PP_0420at 509.610 kb on + strand, within PP_0420at 509.610 kb on + strand, within PP_0420at 509.610 kb on + strand, within PP_0420at 509.610 kb on + strand, within PP_0420at 509.611 kb on - strand, within PP_0420at 509.611 kb on - strand, within PP_0420at 509.611 kb on - strand, within PP_0420at 509.611 kb on - strand, within PP_0420at 509.611 kb on - strand, within PP_0420at 509.611 kb on - strand, within PP_0420at 509.611 kb on - strand, within PP_0420at 509.611 kb on - strand, within PP_0420at 509.611 kb on - strand, within PP_0420at 509.658 kb on + strand, within PP_0420at 509.659 kb on - strand, within PP_0420at 509.697 kb on + strand, within PP_0420at 509.697 kb on + strand, within PP_0420at 509.697 kb on + strand, within PP_0420at 509.699 kb on + strand, within PP_0420at 509.700 kb on - strand, within PP_0420at 509.700 kb on - strand, within PP_0420at 509.700 kb on - strand, within PP_0420at 509.700 kb on - strand, within PP_0420at 509.700 kb on - strand, within PP_0420at 509.700 kb on - strand, within PP_0420at 509.731 kb on + strand, within PP_0420at 509.732 kb on - strand, within PP_0420at 509.772 kb on + strand, within PP_0420at 509.773 kb on - strand, within PP_0420at 510.032 kb on - strandat 510.093 kb on + strand, within PP_0421at 510.093 kb on + strand, within PP_0421at 510.316 kb on + strand, within PP_0421at 510.374 kb on + strand, within PP_0421at 510.374 kb on - strand, within PP_0421at 510.514 kb on + strand, within PP_0421at 510.514 kb on + strand, within PP_0421at 510.515 kb on - strand, within PP_0421at 510.529 kb on + strand, within PP_0421at 510.529 kb on + strand, within PP_0421at 510.529 kb on + strand, within PP_0421at 510.530 kb on - strand, within PP_0421at 510.722 kb on + strand, within PP_0421at 510.723 kb on - strand, within PP_0421at 510.874 kb on + strand, within PP_0421at 510.875 kb on - strand, within PP_0421at 510.875 kb on - strand, within PP_0421at 510.893 kb on + strand, within PP_0421at 510.893 kb on + strand, within PP_0421at 510.893 kb on + strand, within PP_0421at 510.893 kb on + strand, within PP_0421at 510.893 kb on + strand, within PP_0421at 510.894 kb on - strand, within PP_0421at 510.930 kb on + strandat 510.931 kb on - strandat 510.948 kb on + strandat 510.949 kb on - strandat 510.949 kb on - strandat 510.949 kb on - strandat 510.949 kb on - strandat 510.949 kb on - strandat 510.998 kb on - strandat 510.998 kb on - strandat 510.998 kb on - strandat 511.005 kb on + strandat 511.005 kb on + strandat 511.006 kb on - strandat 511.279 kb on + strand, within PP_0422at 511.279 kb on + strand, within PP_0422at 511.327 kb on + strand, within PP_0422at 511.348 kb on + strand, within PP_0422at 511.349 kb on - strand, within PP_0422at 511.349 kb on - strand, within PP_0422at 511.587 kb on + strand, within PP_0422at 511.587 kb on + strand, within PP_0422at 511.705 kb on - strand, within PP_0422at 511.902 kb on - strandat 511.931 kb on + strandat 511.931 kb on + strandat 511.997 kb on + strandat 511.997 kb on + strandat 511.997 kb on + strandat 511.998 kb on - strandat 511.998 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 3-methyl-1-butanol 0.1 vol% (C)
remove
509,036 + -0.1
509,108 - -2.3
509,108 - +1.6
509,115 + +0.5
509,115 + +2.2
509,115 + -0.3
509,116 - +0.1
509,116 - -0.8
509,116 - +0.7
509,116 - -0.5
509,140 + +1.4
509,140 + -1.1
509,140 + +0.6
509,141 - -3.3
509,155 + +1.0
509,155 + -1.4
509,156 - -3.5
509,156 - -0.1
509,156 - -4.2
509,168 + -0.8
509,168 + -0.0
509,168 + +0.3
509,169 - -3.8
509,205 + +0.9
509,246 + -1.4
509,247 - -4.4
509,247 - -3.9
509,356 + -3.0
509,371 + +0.0
509,382 + -3.6
509,399 + -2.0
509,399 + -4.3
509,415 - -4.3
509,415 - -4.0
509,429 + -0.6
509,524 - PP_0420 0.25 -4.2
509,524 - PP_0420 0.25 -4.8
509,610 + PP_0420 0.39 -2.4
509,610 + PP_0420 0.39 -5.0
509,610 + PP_0420 0.39 -4.7
509,610 + PP_0420 0.39 -4.3
509,610 + PP_0420 0.39 -3.9
509,610 + PP_0420 0.39 -0.7
509,611 - PP_0420 0.39 -4.1
509,611 - PP_0420 0.39 -2.5
509,611 - PP_0420 0.39 -4.7
509,611 - PP_0420 0.39 -3.0
509,611 - PP_0420 0.39 -4.7
509,611 - PP_0420 0.39 -1.6
509,611 - PP_0420 0.39 -3.7
509,611 - PP_0420 0.39 -3.8
509,611 - PP_0420 0.39 -2.4
509,658 + PP_0420 0.47 -3.1
509,659 - PP_0420 0.47 -3.7
509,697 + PP_0420 0.54 -2.5
509,697 + PP_0420 0.54 -3.0
509,697 + PP_0420 0.54 -3.2
509,699 + PP_0420 0.54 -4.2
509,700 - PP_0420 0.54 -4.5
509,700 - PP_0420 0.54 -3.3
509,700 - PP_0420 0.54 -3.5
509,700 - PP_0420 0.54 -2.5
509,700 - PP_0420 0.54 -4.2
509,700 - PP_0420 0.54 -3.0
509,731 + PP_0420 0.59 -1.7
509,732 - PP_0420 0.60 -2.9
509,772 + PP_0420 0.66 -0.9
509,773 - PP_0420 0.66 -3.2
510,032 - -3.3
510,093 + PP_0421 0.11 -4.0
510,093 + PP_0421 0.11 -4.5
510,316 + PP_0421 0.32 -3.5
510,374 + PP_0421 0.37 -2.8
510,374 - PP_0421 0.37 -4.1
510,514 + PP_0421 0.51 -3.1
510,514 + PP_0421 0.51 -3.8
510,515 - PP_0421 0.51 -2.8
510,529 + PP_0421 0.52 -3.9
510,529 + PP_0421 0.52 -0.7
510,529 + PP_0421 0.52 -3.8
510,530 - PP_0421 0.52 -3.3
510,722 + PP_0421 0.71 -3.9
510,723 - PP_0421 0.71 -3.2
510,874 + PP_0421 0.85 -3.0
510,875 - PP_0421 0.85 -2.1
510,875 - PP_0421 0.85 -1.8
510,893 + PP_0421 0.87 -3.6
510,893 + PP_0421 0.87 -0.8
510,893 + PP_0421 0.87 -4.0
510,893 + PP_0421 0.87 -0.9
510,893 + PP_0421 0.87 -4.0
510,894 - PP_0421 0.87 -3.0
510,930 + -4.9
510,931 - -3.5
510,948 + -3.8
510,949 - -3.5
510,949 - -3.0
510,949 - -0.7
510,949 - +0.3
510,949 - -4.0
510,998 - -4.9
510,998 - -3.4
510,998 - -4.6
511,005 + -2.0
511,005 + -3.0
511,006 - -4.3
511,279 + PP_0422 0.30 -2.3
511,279 + PP_0422 0.30 -4.0
511,327 + PP_0422 0.36 -4.2
511,348 + PP_0422 0.38 -3.6
511,349 - PP_0422 0.39 -3.8
511,349 - PP_0422 0.39 -3.8
511,587 + PP_0422 0.67 -2.4
511,587 + PP_0422 0.67 -3.5
511,705 - PP_0422 0.81 -2.8
511,902 - -1.5
511,931 + -0.5
511,931 + -0.3
511,997 + +0.4
511,997 + +0.1
511,997 + +0.4
511,998 - +0.8
511,998 - -0.3

Or see this region's nucleotide sequence