Experiment: 3-methyl-1-butanol 0.1 vol% (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0413 and PP_0414 are separated by 10 nucleotides PP_0414 and PP_0415 are separated by 150 nucleotides PP_0415 and PP_0416 overlap by 4 nucleotides PP_0416 and PP_0417 are separated by 69 nucleotides
PP_0413: PP_0413 - Polyamine ABC transporter, permease protein, at 501,712 to 502,959
_0413
PP_0414: PP_0414 - Polyamine ABC transporter, permease protein, at 502,970 to 503,797
_0414
PP_0415: PP_0415 - ribulose-5-phosphate 3-epimerase, at 503,948 to 504,622
_0415
PP_0416: PP_0416 - Phosphoglycolate phosphatase, at 504,619 to 505,437
_0416
PP_0417: PP_0417 - Anthranilate synthase component 1, at 505,507 to 506,988
_0417
Position (kb) 503
504
505 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 502.982 kb on + strand at 502.982 kb on + strand at 502.982 kb on + strand at 502.982 kb on + strand at 502.982 kb on + strand at 502.983 kb on - strand at 502.983 kb on - strand at 502.983 kb on - strand at 502.983 kb on - strand at 502.983 kb on - strand at 502.983 kb on - strand at 502.983 kb on - strand at 502.983 kb on - strand at 503.012 kb on + strand at 503.012 kb on + strand at 503.012 kb on + strand at 503.024 kb on - strand at 503.142 kb on - strand, within PP_0414 at 503.349 kb on - strand, within PP_0414 at 503.349 kb on - strand, within PP_0414 at 503.437 kb on + strand, within PP_0414 at 503.437 kb on + strand, within PP_0414 at 503.438 kb on - strand, within PP_0414 at 503.468 kb on + strand, within PP_0414 at 503.878 kb on + strand at 503.879 kb on - strand at 503.909 kb on + strand at 503.957 kb on + strand at 503.957 kb on + strand at 504.896 kb on - strand, within PP_0416 at 504.896 kb on - strand, within PP_0416 at 504.896 kb on - strand, within PP_0416 at 504.916 kb on - strand, within PP_0416 at 505.222 kb on + strand, within PP_0416 at 505.223 kb on - strand, within PP_0416 at 505.223 kb on - strand, within PP_0416 at 505.223 kb on - strand, within PP_0416 at 505.228 kb on + strand at 505.229 kb on - strand, within PP_0416 at 505.230 kb on + strand, within PP_0416 at 505.231 kb on - strand, within PP_0416 at 505.481 kb on + strand at 505.481 kb on + strand at 505.481 kb on + strand at 505.481 kb on + strand at 505.482 kb on - strand at 505.482 kb on - strand at 505.482 kb on - strand at 505.482 kb on - strand at 505.555 kb on - strand at 505.607 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 3-methyl-1-butanol 0.1 vol% (C) remove 502,982 + -1.1 502,982 + +1.7 502,982 + -0.9 502,982 + +0.4 502,982 + -1.6 502,983 - -0.5 502,983 - -1.9 502,983 - -2.3 502,983 - -1.1 502,983 - -0.9 502,983 - -3.9 502,983 - -0.9 502,983 - -1.8 503,012 + -0.6 503,012 + +1.3 503,012 + +1.0 503,024 - +0.2 503,142 - PP_0414 0.21 +0.2 503,349 - PP_0414 0.46 +0.2 503,349 - PP_0414 0.46 -2.1 503,437 + PP_0414 0.56 -0.1 503,437 + PP_0414 0.56 -2.4 503,438 - PP_0414 0.57 -1.1 503,468 + PP_0414 0.60 -0.9 503,878 + +1.0 503,879 - +0.8 503,909 + +0.3 503,957 + +1.6 503,957 + -2.0 504,896 - PP_0416 0.34 -1.1 504,896 - PP_0416 0.34 -2.4 504,896 - PP_0416 0.34 -0.4 504,916 - PP_0416 0.36 +0.7 505,222 + PP_0416 0.74 -0.5 505,223 - PP_0416 0.74 +0.6 505,223 - PP_0416 0.74 +0.5 505,223 - PP_0416 0.74 +0.4 505,228 + +0.3 505,229 - PP_0416 0.74 -0.3 505,230 + PP_0416 0.75 +0.2 505,231 - PP_0416 0.75 +0.8 505,481 + -0.1 505,481 + +0.9 505,481 + +0.8 505,481 + +1.1 505,482 - -3.4 505,482 - -3.1 505,482 - -1.5 505,482 - -3.8 505,555 - -1.3 505,607 - -3.5
Or see this region's nucleotide sequence