Experiment: 3-methyl-1-butanol 0.1 vol% (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0377 and PP_0378 overlap by 4 nucleotides PP_0378 and PP_0379 are separated by 163 nucleotides PP_0379 and PP_0380 are separated by 78 nucleotides PP_0380 and PP_0381 are separated by 159 nucleotides
PP_0377: PP_0377 - coenzyme PQQ synthesis protein D, at 457,752 to 458,027
_0377
PP_0378: PP_0378 - Pyrroloquinoline-quinone synthase, at 458,024 to 458,779
_0378
PP_0379: PP_0379 - Coenzyme PQQ synthesis protein B, at 458,943 to 459,854
_0379
PP_0380: PP_0380 - Coenzyme PQQ synthesis protein A, at 459,933 to 460,004
_0380
PP_0381: PP_0381 - Coenzyme PQQ synthesis protein F, at 460,164 to 462,464
_0381
Position (kb) 458
459
460 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 457.973 kb on - strand, within PP_0377 at 458.005 kb on - strand at 458.012 kb on + strand at 458.027 kb on + strand at 458.027 kb on + strand at 458.028 kb on - strand at 458.119 kb on + strand, within PP_0378 at 458.120 kb on - strand, within PP_0378 at 458.161 kb on + strand, within PP_0378 at 458.161 kb on + strand, within PP_0378 at 458.161 kb on + strand, within PP_0378 at 458.162 kb on - strand, within PP_0378 at 458.187 kb on + strand, within PP_0378 at 458.188 kb on - strand, within PP_0378 at 458.188 kb on - strand, within PP_0378 at 458.256 kb on + strand, within PP_0378 at 458.256 kb on + strand, within PP_0378 at 458.257 kb on - strand, within PP_0378 at 458.430 kb on - strand, within PP_0378 at 458.430 kb on - strand, within PP_0378 at 458.430 kb on - strand, within PP_0378 at 458.622 kb on + strand, within PP_0378 at 458.622 kb on + strand, within PP_0378 at 458.623 kb on - strand, within PP_0378 at 458.625 kb on + strand, within PP_0378 at 458.625 kb on + strand, within PP_0378 at 458.626 kb on - strand, within PP_0378 at 458.694 kb on + strand, within PP_0378 at 458.694 kb on + strand, within PP_0378 at 458.695 kb on - strand, within PP_0378 at 458.712 kb on + strand at 458.712 kb on + strand at 458.712 kb on + strand at 458.713 kb on - strand at 458.713 kb on - strand at 458.713 kb on - strand at 458.715 kb on + strand at 458.716 kb on - strand at 458.795 kb on - strand at 458.804 kb on - strand at 458.804 kb on - strand at 458.940 kb on + strand at 458.944 kb on + strand at 458.944 kb on + strand at 458.945 kb on - strand at 459.053 kb on + strand, within PP_0379 at 459.054 kb on - strand, within PP_0379 at 459.054 kb on - strand, within PP_0379 at 459.054 kb on - strand, within PP_0379 at 459.054 kb on - strand, within PP_0379 at 459.057 kb on + strand, within PP_0379 at 459.057 kb on + strand, within PP_0379 at 459.057 kb on + strand, within PP_0379 at 459.058 kb on - strand, within PP_0379 at 459.246 kb on + strand, within PP_0379 at 459.246 kb on + strand, within PP_0379 at 459.246 kb on + strand, within PP_0379 at 459.268 kb on + strand, within PP_0379 at 459.268 kb on + strand, within PP_0379 at 459.352 kb on + strand, within PP_0379 at 459.352 kb on + strand, within PP_0379 at 459.700 kb on - strand, within PP_0379 at 459.700 kb on - strand, within PP_0379 at 459.850 kb on + strand at 459.850 kb on + strand at 459.850 kb on + strand at 459.850 kb on + strand at 459.850 kb on + strand at 459.850 kb on + strand at 459.850 kb on + strand at 459.851 kb on - strand at 459.851 kb on - strand at 459.851 kb on - strand at 459.851 kb on - strand at 459.866 kb on - strand at 459.923 kb on + strand at 459.923 kb on + strand at 459.923 kb on + strand at 459.935 kb on - strand at 459.949 kb on + strand, within PP_0380 at 459.949 kb on + strand, within PP_0380 at 459.949 kb on + strand, within PP_0380 at 459.950 kb on - strand at 459.950 kb on - strand, within PP_0380 at 459.985 kb on + strand, within PP_0380 at 459.985 kb on + strand, within PP_0380 at 459.985 kb on + strand, within PP_0380 at 459.985 kb on + strand, within PP_0380 at 459.985 kb on + strand, within PP_0380 at 459.985 kb on + strand, within PP_0380 at 459.986 kb on - strand, within PP_0380 at 460.010 kb on + strand at 460.010 kb on + strand at 460.010 kb on + strand at 460.011 kb on - strand at 460.044 kb on - strand at 460.044 kb on - strand at 460.044 kb on - strand at 460.046 kb on + strand at 460.047 kb on - strand at 460.095 kb on + strand at 460.100 kb on + strand at 460.100 kb on + strand at 460.100 kb on + strand at 460.101 kb on - strand at 460.126 kb on + strand at 460.130 kb on + strand at 460.161 kb on + strand at 460.161 kb on + strand at 460.161 kb on + strand at 460.161 kb on + strand at 460.162 kb on - strand at 460.162 kb on - strand at 460.218 kb on + strand at 460.219 kb on - strand at 460.219 kb on - strand at 460.289 kb on + strand at 460.570 kb on - strand, within PP_0381 at 460.730 kb on + strand, within PP_0381 at 460.731 kb on - strand, within PP_0381
Per-strain Table
Position Strand Gene LocusTag Fraction 3-methyl-1-butanol 0.1 vol% (C) remove 457,973 - PP_0377 0.80 -1.8 458,005 - -1.6 458,012 + -2.4 458,027 + -3.7 458,027 + -4.3 458,028 - +2.4 458,119 + PP_0378 0.13 -3.4 458,120 - PP_0378 0.13 -2.3 458,161 + PP_0378 0.18 +0.2 458,161 + PP_0378 0.18 -3.7 458,161 + PP_0378 0.18 -4.4 458,162 - PP_0378 0.18 -2.7 458,187 + PP_0378 0.22 -2.9 458,188 - PP_0378 0.22 -1.9 458,188 - PP_0378 0.22 -4.7 458,256 + PP_0378 0.31 -2.6 458,256 + PP_0378 0.31 -2.4 458,257 - PP_0378 0.31 -2.9 458,430 - PP_0378 0.54 -2.9 458,430 - PP_0378 0.54 -3.9 458,430 - PP_0378 0.54 -2.7 458,622 + PP_0378 0.79 -3.9 458,622 + PP_0378 0.79 -4.2 458,623 - PP_0378 0.79 -1.0 458,625 + PP_0378 0.79 -3.2 458,625 + PP_0378 0.79 -1.8 458,626 - PP_0378 0.80 -4.2 458,694 + PP_0378 0.89 -3.9 458,694 + PP_0378 0.89 -2.9 458,695 - PP_0378 0.89 -4.6 458,712 + -1.5 458,712 + -3.9 458,712 + -3.8 458,713 - -3.3 458,713 - -1.9 458,713 - -3.5 458,715 + -3.0 458,716 - -3.6 458,795 - -0.4 458,804 - +0.9 458,804 - -0.9 458,940 + -3.1 458,944 + -1.6 458,944 + -2.2 458,945 - -0.8 459,053 + PP_0379 0.12 -3.5 459,054 - PP_0379 0.12 -0.3 459,054 - PP_0379 0.12 +0.4 459,054 - PP_0379 0.12 +0.5 459,054 - PP_0379 0.12 -1.6 459,057 + PP_0379 0.12 -2.9 459,057 + PP_0379 0.12 -2.3 459,057 + PP_0379 0.12 -3.1 459,058 - PP_0379 0.13 -2.5 459,246 + PP_0379 0.33 -4.1 459,246 + PP_0379 0.33 -2.8 459,246 + PP_0379 0.33 -3.6 459,268 + PP_0379 0.36 -3.3 459,268 + PP_0379 0.36 -3.5 459,352 + PP_0379 0.45 -2.0 459,352 + PP_0379 0.45 -3.3 459,700 - PP_0379 0.83 -0.3 459,700 - PP_0379 0.83 -2.4 459,850 + -1.4 459,850 + -2.9 459,850 + -2.7 459,850 + -0.5 459,850 + -4.1 459,850 + -2.9 459,850 + -1.6 459,851 - -2.1 459,851 - -3.7 459,851 - -2.5 459,851 - -1.3 459,866 - +0.2 459,923 + -4.3 459,923 + -4.5 459,923 + -1.0 459,935 - +1.1 459,949 + PP_0380 0.22 -4.2 459,949 + PP_0380 0.22 -3.4 459,949 + PP_0380 0.22 -3.4 459,950 - +0.9 459,950 - PP_0380 0.24 -2.3 459,985 + PP_0380 0.72 -0.7 459,985 + PP_0380 0.72 +0.7 459,985 + PP_0380 0.72 -0.2 459,985 + PP_0380 0.72 +0.1 459,985 + PP_0380 0.72 -2.0 459,985 + PP_0380 0.72 -0.3 459,986 - PP_0380 0.74 -0.0 460,010 + -2.6 460,010 + -3.5 460,010 + -2.2 460,011 - -0.8 460,044 - -1.6 460,044 - -1.0 460,044 - +0.2 460,046 + +0.6 460,047 - -0.5 460,095 + -1.0 460,100 + +0.8 460,100 + -0.6 460,100 + -0.7 460,101 - +0.5 460,126 + +0.3 460,130 + +2.0 460,161 + -3.1 460,161 + +1.2 460,161 + +0.7 460,161 + -2.3 460,162 - -0.4 460,162 - -0.6 460,218 + -2.0 460,219 - -3.9 460,219 - -2.6 460,289 + -3.1 460,570 - PP_0381 0.18 -3.5 460,730 + PP_0381 0.25 -3.0 460,731 - PP_0381 0.25 -2.1
Or see this region's nucleotide sequence