Experiment: 3-methyl-1-butanol 0.1 vol% (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0376 and PP_0377 are separated by 1 nucleotides PP_0377 and PP_0378 overlap by 4 nucleotides PP_0378 and PP_0379 are separated by 163 nucleotides
PP_0376: PP_0376 - Coenzyme PQQ synthesis protein E, at 456,620 to 457,750
_0376
PP_0377: PP_0377 - coenzyme PQQ synthesis protein D, at 457,752 to 458,027
_0377
PP_0378: PP_0378 - Pyrroloquinoline-quinone synthase, at 458,024 to 458,779
_0378
PP_0379: PP_0379 - Coenzyme PQQ synthesis protein B, at 458,943 to 459,854
_0379
Position (kb) 457
458
459 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 456.859 kb on - strand at 456.898 kb on + strand, within PP_0376 at 456.898 kb on + strand, within PP_0376 at 456.898 kb on + strand, within PP_0376 at 456.898 kb on + strand, within PP_0376 at 456.898 kb on + strand, within PP_0376 at 456.898 kb on + strand, within PP_0376 at 456.899 kb on - strand, within PP_0376 at 456.899 kb on - strand, within PP_0376 at 456.899 kb on - strand, within PP_0376 at 456.899 kb on - strand, within PP_0376 at 456.920 kb on + strand, within PP_0376 at 456.920 kb on + strand, within PP_0376 at 456.921 kb on - strand, within PP_0376 at 456.974 kb on - strand, within PP_0376 at 457.041 kb on + strand, within PP_0376 at 457.041 kb on + strand, within PP_0376 at 457.042 kb on - strand, within PP_0376 at 457.045 kb on - strand, within PP_0376 at 457.045 kb on - strand, within PP_0376 at 457.117 kb on + strand, within PP_0376 at 457.118 kb on - strand, within PP_0376 at 457.118 kb on - strand, within PP_0376 at 457.161 kb on - strand, within PP_0376 at 457.185 kb on + strand, within PP_0376 at 457.186 kb on - strand, within PP_0376 at 457.186 kb on - strand, within PP_0376 at 457.492 kb on - strand, within PP_0376 at 457.492 kb on - strand, within PP_0376 at 457.494 kb on + strand, within PP_0376 at 457.495 kb on - strand, within PP_0376 at 457.671 kb on + strand at 457.696 kb on - strand at 457.742 kb on - strand at 457.742 kb on - strand at 457.939 kb on + strand, within PP_0377 at 457.973 kb on - strand, within PP_0377 at 458.005 kb on - strand at 458.012 kb on + strand at 458.027 kb on + strand at 458.027 kb on + strand at 458.028 kb on - strand at 458.119 kb on + strand, within PP_0378 at 458.120 kb on - strand, within PP_0378 at 458.161 kb on + strand, within PP_0378 at 458.161 kb on + strand, within PP_0378 at 458.161 kb on + strand, within PP_0378 at 458.162 kb on - strand, within PP_0378 at 458.187 kb on + strand, within PP_0378 at 458.188 kb on - strand, within PP_0378 at 458.188 kb on - strand, within PP_0378 at 458.256 kb on + strand, within PP_0378 at 458.256 kb on + strand, within PP_0378 at 458.257 kb on - strand, within PP_0378 at 458.430 kb on - strand, within PP_0378 at 458.430 kb on - strand, within PP_0378 at 458.430 kb on - strand, within PP_0378 at 458.622 kb on + strand, within PP_0378 at 458.622 kb on + strand, within PP_0378 at 458.623 kb on - strand, within PP_0378 at 458.625 kb on + strand, within PP_0378 at 458.625 kb on + strand, within PP_0378 at 458.626 kb on - strand, within PP_0378 at 458.694 kb on + strand, within PP_0378 at 458.694 kb on + strand, within PP_0378 at 458.695 kb on - strand, within PP_0378 at 458.712 kb on + strand at 458.712 kb on + strand at 458.712 kb on + strand at 458.713 kb on - strand at 458.713 kb on - strand at 458.713 kb on - strand at 458.715 kb on + strand at 458.716 kb on - strand at 458.795 kb on - strand at 458.804 kb on - strand at 458.804 kb on - strand at 458.940 kb on + strand at 458.944 kb on + strand at 458.944 kb on + strand at 458.945 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 3-methyl-1-butanol 0.1 vol% (C) remove 456,859 - +0.3 456,898 + PP_0376 0.25 -4.2 456,898 + PP_0376 0.25 -3.7 456,898 + PP_0376 0.25 -3.9 456,898 + PP_0376 0.25 -3.4 456,898 + PP_0376 0.25 -2.4 456,898 + PP_0376 0.25 -3.8 456,899 - PP_0376 0.25 -3.7 456,899 - PP_0376 0.25 -3.7 456,899 - PP_0376 0.25 -3.4 456,899 - PP_0376 0.25 -4.2 456,920 + PP_0376 0.27 -3.7 456,920 + PP_0376 0.27 -1.7 456,921 - PP_0376 0.27 -4.3 456,974 - PP_0376 0.31 -1.9 457,041 + PP_0376 0.37 -3.8 457,041 + PP_0376 0.37 -2.7 457,042 - PP_0376 0.37 -2.5 457,045 - PP_0376 0.38 -1.1 457,045 - PP_0376 0.38 -3.3 457,117 + PP_0376 0.44 -0.1 457,118 - PP_0376 0.44 -4.0 457,118 - PP_0376 0.44 -2.5 457,161 - PP_0376 0.48 -3.8 457,185 + PP_0376 0.50 -2.7 457,186 - PP_0376 0.50 -2.2 457,186 - PP_0376 0.50 -2.1 457,492 - PP_0376 0.77 -2.7 457,492 - PP_0376 0.77 -2.2 457,494 + PP_0376 0.77 -3.7 457,495 - PP_0376 0.77 -1.8 457,671 + -2.3 457,696 - -2.7 457,742 - -3.3 457,742 - -1.6 457,939 + PP_0377 0.68 -3.2 457,973 - PP_0377 0.80 -1.8 458,005 - -1.6 458,012 + -2.4 458,027 + -3.7 458,027 + -4.3 458,028 - +2.4 458,119 + PP_0378 0.13 -3.4 458,120 - PP_0378 0.13 -2.3 458,161 + PP_0378 0.18 +0.2 458,161 + PP_0378 0.18 -3.7 458,161 + PP_0378 0.18 -4.4 458,162 - PP_0378 0.18 -2.7 458,187 + PP_0378 0.22 -2.9 458,188 - PP_0378 0.22 -1.9 458,188 - PP_0378 0.22 -4.7 458,256 + PP_0378 0.31 -2.6 458,256 + PP_0378 0.31 -2.4 458,257 - PP_0378 0.31 -2.9 458,430 - PP_0378 0.54 -2.9 458,430 - PP_0378 0.54 -3.9 458,430 - PP_0378 0.54 -2.7 458,622 + PP_0378 0.79 -3.9 458,622 + PP_0378 0.79 -4.2 458,623 - PP_0378 0.79 -1.0 458,625 + PP_0378 0.79 -3.2 458,625 + PP_0378 0.79 -1.8 458,626 - PP_0378 0.80 -4.2 458,694 + PP_0378 0.89 -3.9 458,694 + PP_0378 0.89 -2.9 458,695 - PP_0378 0.89 -4.6 458,712 + -1.5 458,712 + -3.9 458,712 + -3.8 458,713 - -3.3 458,713 - -1.9 458,713 - -3.5 458,715 + -3.0 458,716 - -3.6 458,795 - -0.4 458,804 - +0.9 458,804 - -0.9 458,940 + -3.1 458,944 + -1.6 458,944 + -2.2 458,945 - -0.8
Or see this region's nucleotide sequence