Experiment: 3-methyl-1-butanol 0.1 vol% (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0335 and PP_0336 are separated by 3 nucleotides PP_0336 and PP_0337 are separated by 168 nucleotides
PP_0335: PP_0335 - Glutathione S-transferase family protein, at 401,902 to 402,525
_0335
PP_0336: PP_0336 - Peptide methionine sulfoxide reductase MsrA, at 402,529 to 403,197
_0336
PP_0337: PP_0337 - Sensory box protein, at 403,366 to 406,056
_0337
Position (kb) 402
403
404 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 401.662 kb on + strand at 401.662 kb on + strand at 401.662 kb on + strand at 401.662 kb on + strand at 401.666 kb on + strand at 401.684 kb on + strand at 401.684 kb on + strand at 401.684 kb on + strand at 401.684 kb on + strand at 401.684 kb on + strand at 401.702 kb on + strand at 401.702 kb on + strand at 401.703 kb on - strand at 401.723 kb on + strand at 401.727 kb on + strand at 401.727 kb on + strand at 401.727 kb on + strand at 401.727 kb on + strand at 401.728 kb on - strand at 401.748 kb on + strand at 401.748 kb on + strand at 401.748 kb on + strand at 401.748 kb on + strand at 401.748 kb on + strand at 401.748 kb on + strand at 401.748 kb on + strand at 401.748 kb on + strand at 401.749 kb on - strand at 401.749 kb on - strand at 401.752 kb on + strand at 401.752 kb on + strand at 401.753 kb on - strand at 401.753 kb on - strand at 401.753 kb on - strand at 401.753 kb on - strand at 401.780 kb on + strand at 401.780 kb on + strand at 401.780 kb on + strand at 401.781 kb on - strand at 401.781 kb on - strand at 401.781 kb on - strand at 401.781 kb on - strand at 401.849 kb on + strand at 401.850 kb on - strand at 401.873 kb on + strand at 401.873 kb on + strand at 401.954 kb on + strand at 401.955 kb on - strand at 401.955 kb on - strand at 402.018 kb on - strand, within PP_0335 at 402.180 kb on - strand, within PP_0335 at 402.223 kb on + strand, within PP_0335 at 402.224 kb on - strand, within PP_0335 at 402.412 kb on + strand, within PP_0335 at 402.412 kb on + strand, within PP_0335 at 402.412 kb on + strand, within PP_0335 at 402.412 kb on + strand, within PP_0335 at 402.412 kb on + strand, within PP_0335 at 402.413 kb on - strand, within PP_0335 at 402.413 kb on - strand, within PP_0335 at 402.413 kb on - strand, within PP_0335 at 402.413 kb on - strand, within PP_0335 at 402.534 kb on + strand at 402.608 kb on + strand, within PP_0336 at 402.608 kb on + strand, within PP_0336 at 402.621 kb on - strand, within PP_0336 at 402.635 kb on + strand, within PP_0336 at 402.755 kb on + strand, within PP_0336 at 402.755 kb on + strand, within PP_0336 at 402.756 kb on - strand, within PP_0336 at 402.756 kb on - strand, within PP_0336 at 402.756 kb on - strand, within PP_0336 at 402.852 kb on - strand, within PP_0336 at 402.926 kb on + strand, within PP_0336 at 402.926 kb on + strand, within PP_0336 at 402.926 kb on + strand, within PP_0336 at 402.926 kb on + strand, within PP_0336 at 402.926 kb on + strand, within PP_0336 at 402.927 kb on - strand, within PP_0336 at 402.927 kb on - strand, within PP_0336 at 402.930 kb on + strand, within PP_0336 at 402.930 kb on + strand, within PP_0336 at 402.930 kb on + strand, within PP_0336 at 402.930 kb on + strand, within PP_0336 at 402.930 kb on + strand, within PP_0336 at 403.094 kb on + strand, within PP_0336 at 403.094 kb on + strand, within PP_0336 at 403.095 kb on - strand, within PP_0336 at 403.095 kb on - strand, within PP_0336 at 403.095 kb on - strand, within PP_0336 at 403.216 kb on - strand at 403.267 kb on + strand at 403.268 kb on - strand at 403.268 kb on - strand at 403.268 kb on - strand at 403.340 kb on + strand at 403.340 kb on + strand at 403.340 kb on + strand at 403.340 kb on + strand at 403.340 kb on + strand at 403.341 kb on - strand at 403.341 kb on - strand at 403.343 kb on - strand at 403.343 kb on - strand at 403.356 kb on + strand at 403.356 kb on + strand at 403.389 kb on - strand at 403.442 kb on + strand at 403.641 kb on + strand, within PP_0337 at 403.874 kb on - strand, within PP_0337 at 403.874 kb on - strand, within PP_0337 at 403.874 kb on - strand, within PP_0337 at 403.874 kb on - strand, within PP_0337 at 404.087 kb on + strand, within PP_0337 at 404.087 kb on + strand, within PP_0337 at 404.088 kb on - strand, within PP_0337 at 404.088 kb on - strand, within PP_0337 at 404.088 kb on - strand, within PP_0337 at 404.150 kb on + strand, within PP_0337 at 404.150 kb on + strand, within PP_0337 at 404.151 kb on - strand, within PP_0337 at 404.189 kb on - strand, within PP_0337
Per-strain Table
Position Strand Gene LocusTag Fraction 3-methyl-1-butanol 0.1 vol% (C) remove 401,662 + +0.4 401,662 + +1.0 401,662 + +1.4 401,662 + +0.8 401,666 + -1.2 401,684 + -1.0 401,684 + -2.0 401,684 + -0.4 401,684 + -3.1 401,684 + +1.2 401,702 + +0.8 401,702 + +1.0 401,703 - -0.0 401,723 + +0.4 401,727 + +0.9 401,727 + -0.3 401,727 + -0.4 401,727 + +1.3 401,728 - -0.4 401,748 + +0.9 401,748 + +0.3 401,748 + +0.1 401,748 + -1.1 401,748 + -1.6 401,748 + +0.2 401,748 + +0.7 401,748 + -0.1 401,749 - +0.2 401,749 - -0.1 401,752 + +0.9 401,752 + -0.3 401,753 - +0.6 401,753 - +1.5 401,753 - +0.7 401,753 - -0.1 401,780 + +0.0 401,780 + +1.9 401,780 + -0.3 401,781 - +0.8 401,781 - -1.4 401,781 - -0.1 401,781 - +0.4 401,849 + +0.3 401,850 - +0.2 401,873 + -0.5 401,873 + +1.1 401,954 + -0.2 401,955 - -3.3 401,955 - -2.2 402,018 - PP_0335 0.19 +1.1 402,180 - PP_0335 0.45 -1.2 402,223 + PP_0335 0.51 -1.0 402,224 - PP_0335 0.52 +0.8 402,412 + PP_0335 0.82 -0.2 402,412 + PP_0335 0.82 -0.1 402,412 + PP_0335 0.82 -0.5 402,412 + PP_0335 0.82 +0.9 402,412 + PP_0335 0.82 +0.2 402,413 - PP_0335 0.82 -1.0 402,413 - PP_0335 0.82 +1.4 402,413 - PP_0335 0.82 +0.5 402,413 - PP_0335 0.82 +2.1 402,534 + -0.1 402,608 + PP_0336 0.12 -0.7 402,608 + PP_0336 0.12 -0.4 402,621 - PP_0336 0.14 -0.3 402,635 + PP_0336 0.16 -2.8 402,755 + PP_0336 0.34 -3.4 402,755 + PP_0336 0.34 +0.5 402,756 - PP_0336 0.34 -0.5 402,756 - PP_0336 0.34 -0.8 402,756 - PP_0336 0.34 +0.4 402,852 - PP_0336 0.48 -0.5 402,926 + PP_0336 0.59 -1.4 402,926 + PP_0336 0.59 -1.9 402,926 + PP_0336 0.59 -0.5 402,926 + PP_0336 0.59 +0.3 402,926 + PP_0336 0.59 +0.1 402,927 - PP_0336 0.59 -0.5 402,927 - PP_0336 0.59 +0.3 402,930 + PP_0336 0.60 -1.8 402,930 + PP_0336 0.60 -2.7 402,930 + PP_0336 0.60 -2.3 402,930 + PP_0336 0.60 +2.9 402,930 + PP_0336 0.60 -2.9 403,094 + PP_0336 0.84 -1.3 403,094 + PP_0336 0.84 -2.0 403,095 - PP_0336 0.85 -0.2 403,095 - PP_0336 0.85 -0.1 403,095 - PP_0336 0.85 -0.0 403,216 - -0.3 403,267 + +0.7 403,268 - -0.6 403,268 - +0.7 403,268 - -0.6 403,340 + -0.5 403,340 + +0.2 403,340 + -2.3 403,340 + +0.8 403,340 + -0.1 403,341 - +2.2 403,341 - -1.0 403,343 - -1.9 403,343 - -0.5 403,356 + +0.1 403,356 + +0.9 403,389 - -0.1 403,442 + -0.2 403,641 + PP_0337 0.10 -1.0 403,874 - PP_0337 0.19 +0.2 403,874 - PP_0337 0.19 -1.5 403,874 - PP_0337 0.19 -0.8 403,874 - PP_0337 0.19 +0.2 404,087 + PP_0337 0.27 -0.3 404,087 + PP_0337 0.27 +0.5 404,088 - PP_0337 0.27 -1.4 404,088 - PP_0337 0.27 +0.0 404,088 - PP_0337 0.27 -2.9 404,150 + PP_0337 0.29 -1.6 404,150 + PP_0337 0.29 +1.2 404,151 - PP_0337 0.29 -2.0 404,189 - PP_0337 0.31 +0.1
Or see this region's nucleotide sequence