Strain Fitness in Pseudomonas putida KT2440 around PP_0297

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_0296 and PP_0297 are separated by 452 nucleotidesPP_0297 and PP_5441 are separated by 129 nucleotidesPP_5441 and PP_0298 are separated by 171 nucleotides PP_0296: PP_0296 - choline / betaine / carnitine ABC transporter - substrate binding protein, at 355,256 to 356,203 _0296 PP_0297: PP_0297 - L-serine dehydratase, at 356,656 to 358,032 _0297 PP_5441: PP_5441 - protein of unknown function, at 358,162 to 358,362 _5441 PP_0298: PP_0298 - AraC-family transcriptional regulator, at 358,534 to 359,640 _0298 Position (kb) 356 357 358 359Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 355.771 kb on - strand, within PP_0296at 355.805 kb on + strand, within PP_0296at 355.805 kb on + strand, within PP_0296at 355.805 kb on + strand, within PP_0296at 355.805 kb on + strand, within PP_0296at 355.863 kb on + strand, within PP_0296at 355.863 kb on + strand, within PP_0296at 355.863 kb on + strand, within PP_0296at 355.864 kb on - strand, within PP_0296at 355.899 kb on - strand, within PP_0296at 355.998 kb on + strand, within PP_0296at 355.998 kb on + strand, within PP_0296at 355.998 kb on + strand, within PP_0296at 355.999 kb on - strand, within PP_0296at 355.999 kb on - strand, within PP_0296at 355.999 kb on - strand, within PP_0296at 356.037 kb on + strand, within PP_0296at 356.114 kb on + strandat 356.114 kb on + strandat 356.114 kb on + strandat 356.114 kb on + strandat 356.114 kb on + strandat 356.220 kb on + strandat 356.221 kb on - strandat 356.222 kb on - strandat 356.307 kb on + strandat 356.308 kb on - strandat 356.363 kb on + strandat 356.518 kb on - strandat 356.784 kb on - strandat 356.806 kb on + strand, within PP_0297at 356.807 kb on - strand, within PP_0297at 357.020 kb on - strand, within PP_0297at 357.041 kb on + strand, within PP_0297at 357.041 kb on + strand, within PP_0297at 357.042 kb on - strand, within PP_0297at 357.042 kb on - strand, within PP_0297at 357.042 kb on - strand, within PP_0297at 357.082 kb on + strand, within PP_0297at 357.082 kb on + strand, within PP_0297at 357.082 kb on + strand, within PP_0297at 357.082 kb on + strand, within PP_0297at 357.083 kb on - strand, within PP_0297at 357.083 kb on - strand, within PP_0297at 357.083 kb on - strand, within PP_0297at 357.085 kb on + strand, within PP_0297at 357.085 kb on + strand, within PP_0297at 357.086 kb on - strand, within PP_0297at 357.086 kb on - strand, within PP_0297at 357.086 kb on - strand, within PP_0297at 357.337 kb on + strand, within PP_0297at 357.337 kb on + strandat 357.338 kb on - strand, within PP_0297at 357.338 kb on - strand, within PP_0297at 357.338 kb on - strand, within PP_0297at 357.562 kb on + strand, within PP_0297at 357.562 kb on + strand, within PP_0297at 357.562 kb on + strand, within PP_0297at 357.562 kb on + strand, within PP_0297at 357.562 kb on + strand, within PP_0297at 357.563 kb on - strand, within PP_0297at 357.563 kb on - strand, within PP_0297at 357.563 kb on - strand, within PP_0297at 357.565 kb on + strand, within PP_0297at 357.565 kb on + strand, within PP_0297at 357.565 kb on + strand, within PP_0297at 357.566 kb on - strand, within PP_0297at 357.566 kb on - strand, within PP_0297at 357.566 kb on - strand, within PP_0297at 357.610 kb on + strand, within PP_0297at 357.938 kb on + strandat 357.969 kb on + strandat 357.970 kb on - strandat 357.982 kb on + strandat 357.982 kb on + strandat 357.982 kb on + strandat 357.983 kb on - strandat 358.079 kb on + strandat 358.080 kb on - strandat 358.102 kb on - strandat 358.102 kb on - strandat 358.161 kb on + strandat 358.161 kb on + strandat 358.162 kb on - strandat 358.162 kb on - strandat 358.162 kb on - strandat 358.162 kb on - strandat 358.172 kb on - strandat 358.172 kb on - strandat 358.245 kb on + strand, within PP_5441at 358.245 kb on + strand, within PP_5441at 358.245 kb on + strand, within PP_5441at 358.246 kb on - strand, within PP_5441at 358.287 kb on - strand, within PP_5441at 358.287 kb on - strand, within PP_5441at 358.373 kb on - strandat 358.448 kb on + strandat 358.449 kb on - strandat 358.475 kb on + strandat 358.476 kb on - strandat 358.485 kb on + strandat 358.485 kb on + strandat 358.485 kb on + strandat 358.485 kb on + strandat 358.485 kb on + strandat 358.486 kb on - strandat 358.601 kb on + strandat 358.601 kb on + strandat 358.601 kb on + strandat 358.601 kb on + strandat 358.602 kb on - strandat 358.602 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 3-methyl-1-butanol 0.1 vol% (C)
remove
355,771 - PP_0296 0.54 +0.4
355,805 + PP_0296 0.58 -0.7
355,805 + PP_0296 0.58 +1.2
355,805 + PP_0296 0.58 -0.5
355,805 + PP_0296 0.58 -0.3
355,863 + PP_0296 0.64 +1.6
355,863 + PP_0296 0.64 +0.4
355,863 + PP_0296 0.64 +0.0
355,864 - PP_0296 0.64 +0.0
355,899 - PP_0296 0.68 -0.0
355,998 + PP_0296 0.78 -0.9
355,998 + PP_0296 0.78 -0.0
355,998 + PP_0296 0.78 -0.1
355,999 - PP_0296 0.78 -1.1
355,999 - PP_0296 0.78 -2.0
355,999 - PP_0296 0.78 -3.0
356,037 + PP_0296 0.82 +1.3
356,114 + -1.4
356,114 + +1.4
356,114 + +0.9
356,114 + -0.9
356,114 + +0.6
356,220 + +0.0
356,221 - +1.3
356,222 - +1.9
356,307 + +0.7
356,308 - +0.2
356,363 + +2.1
356,518 - -3.5
356,784 - +0.1
356,806 + PP_0297 0.11 -0.9
356,807 - PP_0297 0.11 -1.2
357,020 - PP_0297 0.26 +0.5
357,041 + PP_0297 0.28 -0.7
357,041 + PP_0297 0.28 -1.4
357,042 - PP_0297 0.28 +0.2
357,042 - PP_0297 0.28 +1.2
357,042 - PP_0297 0.28 -2.0
357,082 + PP_0297 0.31 +1.2
357,082 + PP_0297 0.31 -0.1
357,082 + PP_0297 0.31 -0.4
357,082 + PP_0297 0.31 -0.9
357,083 - PP_0297 0.31 -0.5
357,083 - PP_0297 0.31 +1.4
357,083 - PP_0297 0.31 -1.0
357,085 + PP_0297 0.31 +0.5
357,085 + PP_0297 0.31 -1.7
357,086 - PP_0297 0.31 -1.2
357,086 - PP_0297 0.31 -0.7
357,086 - PP_0297 0.31 -0.6
357,337 + PP_0297 0.49 +0.2
357,337 + +0.1
357,338 - PP_0297 0.50 -1.0
357,338 - PP_0297 0.50 -0.2
357,338 - PP_0297 0.50 -3.0
357,562 + PP_0297 0.66 -0.3
357,562 + PP_0297 0.66 -0.5
357,562 + PP_0297 0.66 -0.9
357,562 + PP_0297 0.66 -0.2
357,562 + PP_0297 0.66 -1.7
357,563 - PP_0297 0.66 +0.1
357,563 - PP_0297 0.66 -0.7
357,563 - PP_0297 0.66 -1.2
357,565 + PP_0297 0.66 -0.0
357,565 + PP_0297 0.66 +2.3
357,565 + PP_0297 0.66 -2.2
357,566 - PP_0297 0.66 -1.1
357,566 - PP_0297 0.66 -0.8
357,566 - PP_0297 0.66 +0.9
357,610 + PP_0297 0.69 +0.3
357,938 + -0.6
357,969 + +1.9
357,970 - +0.1
357,982 + -3.4
357,982 + -1.5
357,982 + -1.9
357,983 - +0.3
358,079 + -1.4
358,080 - -0.7
358,102 - -0.6
358,102 - -1.5
358,161 + -1.6
358,161 + -2.4
358,162 - -0.4
358,162 - +0.5
358,162 - -1.6
358,162 - -0.4
358,172 - -0.3
358,172 - -0.4
358,245 + PP_5441 0.41 -0.9
358,245 + PP_5441 0.41 +0.9
358,245 + PP_5441 0.41 -1.9
358,246 - PP_5441 0.42 -1.7
358,287 - PP_5441 0.62 -4.3
358,287 - PP_5441 0.62 -1.0
358,373 - -1.4
358,448 + -2.1
358,449 - -1.1
358,475 + +0.9
358,476 - -1.0
358,485 + -1.2
358,485 + -2.4
358,485 + -1.6
358,485 + -0.1
358,485 + -0.9
358,486 - +0.4
358,601 + -2.6
358,601 + +0.1
358,601 + -0.8
358,601 + -1.4
358,602 - -3.0
358,602 - -1.0

Or see this region's nucleotide sequence