Strain Fitness in Pseudomonas putida KT2440 around PP_0226

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_0225 and PP_0226 are separated by 2 nucleotidesPP_0226 and PP_0227 overlap by 4 nucleotides PP_0225: PP_0225 - sulfur compound ABC transporter - ATP-binding subunit, at 278,819 to 279,577 _0225 PP_0226: PP_0226 - sulfur compound ABC transporter - permease subunit, at 279,580 to 280,248 _0226 PP_0227: PP_0227 - periplasmic cystine-binding protein, at 280,245 to 281,039 _0227 Position (kb) 279 280 281Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 278.591 kb on - strandat 278.594 kb on + strandat 278.656 kb on - strandat 278.753 kb on + strandat 278.782 kb on + strandat 278.782 kb on + strandat 278.783 kb on - strandat 278.783 kb on - strandat 278.866 kb on + strandat 278.867 kb on - strandat 279.035 kb on + strand, within PP_0225at 279.089 kb on + strand, within PP_0225at 279.089 kb on + strand, within PP_0225at 279.089 kb on + strand, within PP_0225at 279.090 kb on - strand, within PP_0225at 279.090 kb on - strand, within PP_0225at 279.090 kb on - strand, within PP_0225at 279.162 kb on + strand, within PP_0225at 279.385 kb on + strand, within PP_0225at 279.386 kb on - strand, within PP_0225at 279.399 kb on - strand, within PP_0225at 279.399 kb on - strand, within PP_0225at 279.660 kb on - strand, within PP_0226at 279.660 kb on - strand, within PP_0226at 279.660 kb on - strand, within PP_0226at 279.680 kb on + strand, within PP_0226at 279.680 kb on + strand, within PP_0226at 279.680 kb on + strand, within PP_0226at 279.681 kb on - strand, within PP_0226at 279.681 kb on - strand, within PP_0226at 279.681 kb on - strand, within PP_0226at 279.939 kb on + strand, within PP_0226at 279.939 kb on + strand, within PP_0226at 279.940 kb on - strand, within PP_0226at 279.940 kb on - strand, within PP_0226at 279.940 kb on - strand, within PP_0226at 279.941 kb on + strand, within PP_0226at 279.942 kb on - strand, within PP_0226at 279.942 kb on - strand, within PP_0226at 279.942 kb on - strand, within PP_0226at 279.942 kb on - strand, within PP_0226at 279.942 kb on - strand, within PP_0226at 280.022 kb on + strand, within PP_0226at 280.022 kb on + strand, within PP_0226at 280.022 kb on + strand, within PP_0226at 280.022 kb on + strand, within PP_0226at 280.023 kb on - strand, within PP_0226at 280.023 kb on - strand, within PP_0226at 280.023 kb on - strand, within PP_0226at 280.074 kb on - strand, within PP_0226at 280.074 kb on - strand, within PP_0226at 280.074 kb on - strand, within PP_0226at 280.182 kb on + strandat 280.182 kb on + strandat 280.182 kb on + strandat 280.182 kb on + strandat 280.182 kb on + strandat 280.184 kb on + strandat 280.184 kb on + strandat 280.271 kb on - strandat 280.271 kb on - strandat 280.516 kb on + strand, within PP_0227at 280.516 kb on + strand, within PP_0227at 280.516 kb on + strand, within PP_0227at 280.516 kb on + strand, within PP_0227at 280.516 kb on + strand, within PP_0227at 280.516 kb on + strand, within PP_0227at 280.517 kb on - strand, within PP_0227at 280.517 kb on - strand, within PP_0227at 280.517 kb on - strand, within PP_0227at 280.564 kb on + strand, within PP_0227at 280.564 kb on + strand, within PP_0227at 280.565 kb on - strand, within PP_0227at 280.565 kb on - strand, within PP_0227at 280.565 kb on - strand, within PP_0227at 280.581 kb on + strand, within PP_0227at 280.582 kb on - strand, within PP_0227at 280.678 kb on + strand, within PP_0227at 280.678 kb on + strand, within PP_0227at 280.679 kb on - strand, within PP_0227at 280.679 kb on - strand, within PP_0227at 280.679 kb on - strand, within PP_0227at 280.679 kb on - strand, within PP_0227at 280.679 kb on - strand, within PP_0227at 280.679 kb on - strand, within PP_0227at 280.679 kb on - strand, within PP_0227at 280.697 kb on - strand, within PP_0227at 280.697 kb on - strand, within PP_0227at 280.740 kb on + strand, within PP_0227at 280.740 kb on + strand, within PP_0227at 280.740 kb on + strand, within PP_0227at 280.740 kb on + strand, within PP_0227at 280.740 kb on + strand, within PP_0227at 280.741 kb on - strand, within PP_0227at 280.741 kb on - strand, within PP_0227at 280.741 kb on - strand, within PP_0227at 280.741 kb on - strand, within PP_0227at 280.741 kb on - strand, within PP_0227at 280.741 kb on - strand, within PP_0227at 280.741 kb on - strand, within PP_0227at 280.898 kb on - strand, within PP_0227at 280.898 kb on - strand, within PP_0227at 281.063 kb on + strandat 281.063 kb on + strandat 281.063 kb on + strandat 281.063 kb on + strandat 281.064 kb on - strandat 281.064 kb on - strandat 281.064 kb on - strandat 281.068 kb on - strandat 281.068 kb on - strandat 281.082 kb on + strandat 281.083 kb on - strandat 281.083 kb on - strandat 281.083 kb on - strandat 281.084 kb on + strandat 281.084 kb on + strandat 281.085 kb on - strandat 281.085 kb on - strandat 281.085 kb on - strandat 281.085 kb on - strandat 281.085 kb on - strandat 281.085 kb on - strandat 281.085 kb on - strandat 281.126 kb on + strandat 281.204 kb on + strandat 281.215 kb on + strandat 281.215 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 3-methyl-1-butanol 0.1 vol% (C)
remove
278,591 - -3.2
278,594 + +0.3
278,656 - +0.6
278,753 + +0.5
278,782 + +2.0
278,782 + -1.3
278,783 - -2.0
278,783 - -0.8
278,866 + +1.1
278,867 - +0.7
279,035 + PP_0225 0.28 +0.3
279,089 + PP_0225 0.36 -0.1
279,089 + PP_0225 0.36 +1.3
279,089 + PP_0225 0.36 +1.2
279,090 - PP_0225 0.36 -0.4
279,090 - PP_0225 0.36 -0.3
279,090 - PP_0225 0.36 +1.4
279,162 + PP_0225 0.45 +2.3
279,385 + PP_0225 0.75 +0.0
279,386 - PP_0225 0.75 -0.5
279,399 - PP_0225 0.76 +1.0
279,399 - PP_0225 0.76 -0.6
279,660 - PP_0226 0.12 -1.6
279,660 - PP_0226 0.12 -0.8
279,660 - PP_0226 0.12 -0.3
279,680 + PP_0226 0.15 +0.7
279,680 + PP_0226 0.15 +0.6
279,680 + PP_0226 0.15 -1.7
279,681 - PP_0226 0.15 -1.0
279,681 - PP_0226 0.15 -0.4
279,681 - PP_0226 0.15 -0.8
279,939 + PP_0226 0.54 +0.2
279,939 + PP_0226 0.54 -2.4
279,940 - PP_0226 0.54 -0.8
279,940 - PP_0226 0.54 +0.0
279,940 - PP_0226 0.54 +1.0
279,941 + PP_0226 0.54 -0.7
279,942 - PP_0226 0.54 -1.4
279,942 - PP_0226 0.54 +0.7
279,942 - PP_0226 0.54 -0.5
279,942 - PP_0226 0.54 -1.1
279,942 - PP_0226 0.54 +0.4
280,022 + PP_0226 0.66 -0.5
280,022 + PP_0226 0.66 +0.3
280,022 + PP_0226 0.66 -1.4
280,022 + PP_0226 0.66 -0.3
280,023 - PP_0226 0.66 +0.5
280,023 - PP_0226 0.66 -1.4
280,023 - PP_0226 0.66 +0.7
280,074 - PP_0226 0.74 -0.1
280,074 - PP_0226 0.74 +0.9
280,074 - PP_0226 0.74 -0.3
280,182 + +0.8
280,182 + +0.9
280,182 + -0.5
280,182 + -0.3
280,182 + +0.7
280,184 + +1.0
280,184 + +0.8
280,271 - +0.4
280,271 - -0.0
280,516 + PP_0227 0.34 +0.3
280,516 + PP_0227 0.34 +0.9
280,516 + PP_0227 0.34 -3.4
280,516 + PP_0227 0.34 -0.3
280,516 + PP_0227 0.34 -2.2
280,516 + PP_0227 0.34 +0.4
280,517 - PP_0227 0.34 -2.1
280,517 - PP_0227 0.34 -0.5
280,517 - PP_0227 0.34 -0.2
280,564 + PP_0227 0.40 -0.3
280,564 + PP_0227 0.40 -0.1
280,565 - PP_0227 0.40 +2.5
280,565 - PP_0227 0.40 +0.0
280,565 - PP_0227 0.40 -2.2
280,581 + PP_0227 0.42 +0.4
280,582 - PP_0227 0.42 -2.4
280,678 + PP_0227 0.54 +0.3
280,678 + PP_0227 0.54 +0.7
280,679 - PP_0227 0.55 +0.4
280,679 - PP_0227 0.55 +0.4
280,679 - PP_0227 0.55 +1.0
280,679 - PP_0227 0.55 -1.1
280,679 - PP_0227 0.55 +0.1
280,679 - PP_0227 0.55 -0.1
280,679 - PP_0227 0.55 -1.0
280,697 - PP_0227 0.57 +0.2
280,697 - PP_0227 0.57 -0.8
280,740 + PP_0227 0.62 +1.0
280,740 + PP_0227 0.62 -0.6
280,740 + PP_0227 0.62 +0.1
280,740 + PP_0227 0.62 +1.0
280,740 + PP_0227 0.62 -0.6
280,741 - PP_0227 0.62 +0.8
280,741 - PP_0227 0.62 -1.0
280,741 - PP_0227 0.62 -0.5
280,741 - PP_0227 0.62 -0.5
280,741 - PP_0227 0.62 -1.9
280,741 - PP_0227 0.62 -2.0
280,741 - PP_0227 0.62 +1.2
280,898 - PP_0227 0.82 +0.5
280,898 - PP_0227 0.82 +0.1
281,063 + -0.4
281,063 + +0.4
281,063 + +1.1
281,063 + +0.5
281,064 - -2.1
281,064 - -0.1
281,064 - -0.8
281,068 - -1.2
281,068 - -1.0
281,082 + +0.9
281,083 - -0.1
281,083 - +0.6
281,083 - -1.1
281,084 + +0.0
281,084 + +1.9
281,085 - -0.1
281,085 - +1.4
281,085 - -0.0
281,085 - +0.6
281,085 - -2.0
281,085 - +2.0
281,085 - +0.0
281,126 + +1.0
281,204 + -0.4
281,215 + +0.8
281,215 + +0.2

Or see this region's nucleotide sequence