Strain Fitness in Pseudomonas putida KT2440 around PP_0100

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
104,266	+		PP_0099	0.40	+1.1
104,266	+		PP_0099	0.40	-0.5
104,293	+		PP_0099	0.43	-0.6
104,294	-		PP_0099	0.43	-3.2
104,610	+		PP_0099	0.73	-0.0
104,611	-		PP_0099	0.73	-3.6
104,611	-		PP_0099	0.73	-0.9
104,611	-		PP_0099	0.73	-3.3
104,611	-		PP_0099	0.73	-1.0
104,663	-		PP_0099	0.78	-2.5
104,733	+		PP_0099	0.84	+0.3
104,734	-		PP_0099	0.84	-2.0
104,734	-		PP_0099	0.84	-3.4
104,773	+		PP_0099	0.88	-1.2
104,774	-		PP_0099	0.88	-3.3
104,949	+				-3.6
104,953	-				-2.8
104,963	-				-3.4
104,963	-				-3.7
104,974	+				-1.2
104,975	-				-3.8
104,975	-				-3.6
105,044	-				-3.4
105,087	+				+0.7
105,087	+				-1.6
105,087	+				+0.8
105,087	+				+1.7
105,088	-				-4.3
105,088	-				-3.8
105,088	-				-2.9
105,088	-				-3.2
105,088	-				-3.9
105,091	+				+0.1
105,092	-				-1.5
105,092	-				-2.9
105,092	-				-2.7
105,116	+				+0.9
105,116	+				-1.2
105,117	-				-3.1
105,117	-				-2.6
105,117	-				-3.3
105,117	-				-2.7
105,117	-				-3.2
105,148	+				+0.7
105,149	-				-1.4
105,149	-				-0.8
105,179	+				+1.9
105,179	+				-1.7
105,183	+				+0.5
105,922	-				-2.6
105,924	+				-3.7
105,924	+				-3.3
105,924	+				-3.2
105,924	+				-1.5
105,925	-				-0.6
105,954	+				-2.9
106,101	-				+0.5
106,127	+				-1.5
106,127	+				-0.4
106,128	-				+1.1
106,128	-				-1.0
106,128	-				+0.1
106,251	-				-2.6
106,333	+		PP_0101	0.13	+1.7
106,334	-		PP_0101	0.13	-1.1
106,470	+		PP_0101	0.22	+0.8
106,717	+		PP_0101	0.38	+0.6
106,718	-		PP_0101	0.38	-0.4
106,743	-		PP_0101	0.40	-0.5
106,743	-		PP_0101	0.40	-1.3
106,850	+		PP_0101	0.47	-0.6
106,851	-		PP_0101	0.47	-0.1
106,921	+		PP_0101	0.52	-0.8
106,921	+		PP_0101	0.52	+0.5