Strain Fitness in Pseudomonas putida KT2440 around PP_0099

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-1-butanol 0.1 vol% (C)
102,895	+		PP_0096	0.84	+1.1
102,895	+		PP_0096	0.84	+1.5
102,895	+		PP_0096	0.84	+0.8
102,896	-		PP_0096	0.84	-1.3
102,951	+		PP_0096	0.86	+0.4
102,951	+		PP_0096	0.86	+2.1
102,951	+		PP_0096	0.86	+1.4
102,952	-		PP_0096	0.86	+0.6
103,011	+		PP_0096	0.89	+1.7
103,012	-		PP_0096	0.89	+3.4
103,012	-		PP_0096	0.89	+1.1
103,012	-		PP_0096	0.89	+1.1
103,012	-		PP_0096	0.89	+2.0
103,012	-		PP_0096	0.89	+1.2
103,017	+		PP_0096	0.89	+2.6
103,017	+		PP_0096	0.89	+1.3
103,017	+				+0.5
103,018	-		PP_0096	0.90	-0.4
103,018	-		PP_0096	0.90	+0.7
103,018	-		PP_0096	0.90	+0.8
103,018	-		PP_0096	0.90	+0.0
103,018	-				+0.8
103,239	+				-0.4
103,239	+				+2.7
103,239	+				+0.1
103,240	-				+3.4
103,240	-				-1.4
103,240	-				-1.4
103,367	-		PP_0097	0.49	-1.5
103,508	+				-0.7
103,509	-				+1.7
103,511	+				+1.4
103,511	+				-0.5
103,511	+				+1.4
103,511	+				-1.0
103,512	-				-1.5
103,512	-				+0.3
103,701	-				-0.2
103,701	-				-0.3
103,745	+				-1.8
103,745	+				-0.2
103,745	+				-0.6
103,745	+				-1.6
103,745	+				+0.3
103,745	+				-0.8
103,746	-				-0.3
103,746	-				-1.2
103,746	-				-0.3
103,746	-				-1.4
103,746	-				-0.4
103,770	-				-1.2
103,939	-				+0.2
103,939	-				+0.1
103,964	+		PP_0099	0.12	+2.8
104,076	+		PP_0099	0.22	-0.4
104,076	+		PP_0099	0.22	-0.8
104,076	+		PP_0099	0.22	-2.4
104,076	+		PP_0099	0.22	+0.4
104,076	+		PP_0099	0.22	-3.1
104,077	-		PP_0099	0.22	+2.2
104,077	-		PP_0099	0.22	-0.1
104,077	-		PP_0099	0.22	-1.3
104,077	-		PP_0099	0.22	-0.3
104,077	-		PP_0099	0.22	-0.6
104,077	-		PP_0099	0.22	-0.9
104,082	+		PP_0099	0.23	-1.2
104,082	+		PP_0099	0.23	+0.3
104,082	+		PP_0099	0.23	-0.9
104,083	-		PP_0099	0.23	-1.8
104,083	-		PP_0099	0.23	-0.6
104,083	-		PP_0099	0.23	-0.7
104,083	-		PP_0099	0.23	-1.1
104,083	-		PP_0099	0.23	-3.8
104,200	-		PP_0099	0.34	-4.2
104,266	+		PP_0099	0.40	+1.1
104,266	+		PP_0099	0.40	-0.5
104,293	+		PP_0099	0.43	-0.6
104,294	-		PP_0099	0.43	-3.2
104,610	+		PP_0099	0.73	-0.0
104,611	-		PP_0099	0.73	-3.6
104,611	-		PP_0099	0.73	-0.9
104,611	-		PP_0099	0.73	-3.3
104,611	-		PP_0099	0.73	-1.0
104,663	-		PP_0099	0.78	-2.5
104,733	+		PP_0099	0.84	+0.3
104,734	-		PP_0099	0.84	-2.0
104,734	-		PP_0099	0.84	-3.4
104,773	+		PP_0099	0.88	-1.2
104,774	-		PP_0099	0.88	-3.3
104,949	+				-3.6
104,953	-				-2.8
104,963	-				-3.4
104,963	-				-3.7
104,974	+				-1.2
104,975	-				-3.8
104,975	-				-3.6
105,044	-				-3.4
105,087	+				+0.7
105,087	+				-1.6
105,087	+				+0.8
105,087	+				+1.7
105,088	-				-4.3
105,088	-				-3.8
105,088	-				-2.9
105,088	-				-3.2
105,088	-				-3.9
105,091	+				+0.1
105,092	-				-1.5
105,092	-				-2.9
105,092	-				-2.7
105,116	+				+0.9
105,116	+				-1.2
105,117	-				-3.1
105,117	-				-2.6
105,117	-				-3.3
105,117	-				-2.7
105,117	-				-3.2
105,148	+				+0.7
105,149	-				-1.4
105,149	-				-0.8
105,179	+				+1.9
105,179	+				-1.7
105,183	+				+0.5