Strain Fitness in Pseudomonas putida KT2440 around PP_0075

Experiment: 3-methyl-1-butanol 0.1 vol% (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0073 and PP_0074 are separated by 25 nucleotidesPP_0074 and PP_0075 are separated by 129 nucleotidesPP_0075 and PP_0076 are separated by 144 nucleotides PP_0073: PP_0073 - Coproporphyrinogen-III oxidase, aerobic, at 83,261 to 84,172 _0073 PP_0074: PP_0074 - shikimate 5-dehydrogenase, at 84,198 to 85,022 _0074 PP_0075: PP_0075 - putative choline sulfate transporter, at 85,152 to 86,717 _0075 PP_0076: PP_0076 - putative choline betaine-binding protein, at 86,862 to 87,785 _0076 Position (kb) 85 86 87Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 84.170 kb on + strandat 84.171 kb on - strandat 84.187 kb on + strandat 84.207 kb on + strandat 85.077 kb on + strandat 85.078 kb on - strandat 85.078 kb on - strandat 85.078 kb on - strandat 85.078 kb on - strandat 85.084 kb on + strandat 85.085 kb on - strandat 85.330 kb on - strand, within PP_0075at 85.335 kb on + strand, within PP_0075at 85.335 kb on + strand, within PP_0075at 85.335 kb on + strand, within PP_0075at 85.335 kb on + strand, within PP_0075at 85.335 kb on + strand, within PP_0075at 85.335 kb on + strand, within PP_0075at 85.335 kb on + strand, within PP_0075at 85.336 kb on - strand, within PP_0075at 85.336 kb on - strand, within PP_0075at 85.376 kb on - strand, within PP_0075at 85.407 kb on + strand, within PP_0075at 85.407 kb on + strand, within PP_0075at 85.408 kb on - strand, within PP_0075at 85.408 kb on - strand, within PP_0075at 85.408 kb on - strand, within PP_0075at 85.416 kb on + strand, within PP_0075at 85.416 kb on + strand, within PP_0075at 85.416 kb on + strand, within PP_0075at 85.416 kb on + strand, within PP_0075at 85.417 kb on - strand, within PP_0075at 85.417 kb on - strand, within PP_0075at 85.417 kb on - strand, within PP_0075at 85.417 kb on - strand, within PP_0075at 85.417 kb on - strand, within PP_0075at 85.504 kb on + strand, within PP_0075at 85.505 kb on - strand, within PP_0075at 85.756 kb on + strand, within PP_0075at 85.756 kb on + strand, within PP_0075at 85.795 kb on + strand, within PP_0075at 85.796 kb on - strand, within PP_0075at 85.820 kb on + strand, within PP_0075at 86.031 kb on + strand, within PP_0075at 86.088 kb on + strand, within PP_0075at 86.088 kb on + strand, within PP_0075at 86.088 kb on + strand, within PP_0075at 86.089 kb on - strand, within PP_0075at 86.089 kb on - strand, within PP_0075at 86.089 kb on - strand, within PP_0075at 86.172 kb on + strand, within PP_0075at 86.172 kb on + strand, within PP_0075at 86.172 kb on + strand, within PP_0075at 86.262 kb on + strand, within PP_0075at 86.262 kb on + strand, within PP_0075at 86.263 kb on - strand, within PP_0075at 86.416 kb on + strand, within PP_0075at 86.417 kb on - strand, within PP_0075at 86.501 kb on - strand, within PP_0075at 86.501 kb on - strand, within PP_0075at 86.551 kb on + strand, within PP_0075at 86.634 kb on + strandat 86.634 kb on + strandat 86.634 kb on + strandat 86.635 kb on - strandat 86.700 kb on + strandat 86.701 kb on - strandat 86.863 kb on + strandat 86.864 kb on - strandat 86.864 kb on - strandat 86.998 kb on - strand, within PP_0076at 86.998 kb on - strand, within PP_0076at 86.998 kb on - strand, within PP_0076at 86.998 kb on - strand, within PP_0076at 86.998 kb on - strand, within PP_0076at 87.106 kb on + strand, within PP_0076at 87.107 kb on - strand, within PP_0076at 87.107 kb on - strand, within PP_0076at 87.107 kb on - strand, within PP_0076at 87.107 kb on - strand, within PP_0076at 87.107 kb on - strand, within PP_0076at 87.107 kb on - strand, within PP_0076at 87.107 kb on - strand, within PP_0076at 87.107 kb on - strand, within PP_0076at 87.108 kb on + strand, within PP_0076at 87.109 kb on - strand, within PP_0076at 87.109 kb on - strand, within PP_0076at 87.109 kb on - strand, within PP_0076at 87.151 kb on + strand, within PP_0076at 87.151 kb on + strand, within PP_0076at 87.152 kb on - strand, within PP_0076at 87.427 kb on + strand, within PP_0076at 87.427 kb on + strand, within PP_0076at 87.427 kb on + strand, within PP_0076at 87.427 kb on + strand, within PP_0076at 87.428 kb on - strand, within PP_0076at 87.428 kb on - strand, within PP_0076at 87.428 kb on - strand, within PP_0076at 87.580 kb on + strand, within PP_0076at 87.580 kb on + strand, within PP_0076at 87.580 kb on + strand, within PP_0076at 87.581 kb on - strand, within PP_0076at 87.636 kb on + strand, within PP_0076at 87.669 kb on - strandat 87.669 kb on - strand, within PP_0076

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-methyl-1-butanol 0.1 vol% (C)
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84,170 + -3.5
84,171 - -1.4
84,187 + -2.5
84,207 + -1.5
85,077 + +0.5
85,078 - -1.2
85,078 - -0.6
85,078 - -0.1
85,078 - -0.4
85,084 + -2.0
85,085 - +1.4
85,330 - PP_0075 0.11 +0.1
85,335 + PP_0075 0.12 +0.9
85,335 + PP_0075 0.12 -0.5
85,335 + PP_0075 0.12 +1.1
85,335 + PP_0075 0.12 -0.5
85,335 + PP_0075 0.12 +0.4
85,335 + PP_0075 0.12 -0.5
85,335 + PP_0075 0.12 -0.7
85,336 - PP_0075 0.12 +1.3
85,336 - PP_0075 0.12 -1.0
85,376 - PP_0075 0.14 +0.8
85,407 + PP_0075 0.16 -1.5
85,407 + PP_0075 0.16 -0.3
85,408 - PP_0075 0.16 -0.1
85,408 - PP_0075 0.16 +1.0
85,408 - PP_0075 0.16 -0.2
85,416 + PP_0075 0.17 -1.0
85,416 + PP_0075 0.17 -0.6
85,416 + PP_0075 0.17 -0.5
85,416 + PP_0075 0.17 +0.0
85,417 - PP_0075 0.17 -2.3
85,417 - PP_0075 0.17 -1.0
85,417 - PP_0075 0.17 +0.4
85,417 - PP_0075 0.17 -0.3
85,417 - PP_0075 0.17 +1.0
85,504 + PP_0075 0.22 -1.2
85,505 - PP_0075 0.23 +0.4
85,756 + PP_0075 0.39 -0.8
85,756 + PP_0075 0.39 -1.1
85,795 + PP_0075 0.41 +0.0
85,796 - PP_0075 0.41 -0.2
85,820 + PP_0075 0.43 -1.3
86,031 + PP_0075 0.56 +0.5
86,088 + PP_0075 0.60 +0.3
86,088 + PP_0075 0.60 +0.2
86,088 + PP_0075 0.60 +0.3
86,089 - PP_0075 0.60 +1.1
86,089 - PP_0075 0.60 -2.7
86,089 - PP_0075 0.60 -1.9
86,172 + PP_0075 0.65 +1.0
86,172 + PP_0075 0.65 -2.3
86,172 + PP_0075 0.65 +0.4
86,262 + PP_0075 0.71 +0.2
86,262 + PP_0075 0.71 -0.9
86,263 - PP_0075 0.71 +3.1
86,416 + PP_0075 0.81 -0.2
86,417 - PP_0075 0.81 -1.3
86,501 - PP_0075 0.86 -0.2
86,501 - PP_0075 0.86 -0.1
86,551 + PP_0075 0.89 -0.1
86,634 + -0.5
86,634 + +0.2
86,634 + +0.8
86,635 - -0.9
86,700 + +0.1
86,701 - +1.8
86,863 + +1.3
86,864 - -0.8
86,864 - -3.0
86,998 - PP_0076 0.15 -0.4
86,998 - PP_0076 0.15 -0.9
86,998 - PP_0076 0.15 -0.5
86,998 - PP_0076 0.15 +0.2
86,998 - PP_0076 0.15 +0.4
87,106 + PP_0076 0.26 -2.2
87,107 - PP_0076 0.27 +0.2
87,107 - PP_0076 0.27 -0.2
87,107 - PP_0076 0.27 -0.7
87,107 - PP_0076 0.27 -0.9
87,107 - PP_0076 0.27 -0.7
87,107 - PP_0076 0.27 +0.0
87,107 - PP_0076 0.27 -2.7
87,107 - PP_0076 0.27 +0.4
87,108 + PP_0076 0.27 +0.3
87,109 - PP_0076 0.27 -0.7
87,109 - PP_0076 0.27 -1.0
87,109 - PP_0076 0.27 +0.5
87,151 + PP_0076 0.31 +0.4
87,151 + PP_0076 0.31 -0.0
87,152 - PP_0076 0.31 +0.5
87,427 + PP_0076 0.61 +0.2
87,427 + PP_0076 0.61 -1.6
87,427 + PP_0076 0.61 -0.6
87,427 + PP_0076 0.61 -2.2
87,428 - PP_0076 0.61 +0.2
87,428 - PP_0076 0.61 +0.0
87,428 - PP_0076 0.61 -1.7
87,580 + PP_0076 0.78 +0.5
87,580 + PP_0076 0.78 -0.2
87,580 + PP_0076 0.78 +0.0
87,581 - PP_0076 0.78 -2.0
87,636 + PP_0076 0.84 +0.7
87,669 - +1.0
87,669 - PP_0076 0.87 -0.5

Or see this region's nucleotide sequence