Experiment: 3-methyl-1-butanol 0.1 vol% (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0015 and PP_0016 are separated by 75 nucleotides PP_0016 and PP_0017 are separated by 56 nucleotides
PP_0015: PP_0015 - putative transposon protein, at 19,163 to 20,122
_0015
PP_0016: PP_0016 - conserved hypothetical protein, at 20,198 to 22,114
_0016
PP_0017: PP_0017 - putative transcriptional regulator, at 22,171 to 22,530
_0017
Position (kb) 20
21
22
23 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 19.205 kb on + strand at 19.205 kb on + strand at 19.206 kb on - strand at 19.206 kb on - strand at 19.206 kb on - strand at 19.213 kb on + strand at 19.213 kb on + strand at 19.213 kb on + strand at 19.213 kb on + strand at 19.213 kb on + strand at 19.214 kb on - strand at 19.231 kb on + strand at 19.232 kb on - strand at 19.269 kb on + strand, within PP_0015 at 19.270 kb on - strand, within PP_0015 at 19.309 kb on + strand, within PP_0015 at 19.309 kb on + strand, within PP_0015 at 19.310 kb on - strand, within PP_0015 at 19.367 kb on + strand, within PP_0015 at 19.367 kb on + strand, within PP_0015 at 19.367 kb on + strand, within PP_0015 at 19.368 kb on - strand, within PP_0015 at 19.368 kb on - strand, within PP_0015 at 19.529 kb on - strand, within PP_0015 at 19.529 kb on - strand, within PP_0015 at 19.542 kb on + strand, within PP_0015 at 19.543 kb on - strand, within PP_0015 at 19.610 kb on + strand, within PP_0015 at 19.618 kb on + strand, within PP_0015 at 19.618 kb on + strand, within PP_0015 at 19.618 kb on + strand, within PP_0015 at 19.619 kb on - strand, within PP_0015 at 19.619 kb on - strand, within PP_0015 at 19.619 kb on - strand, within PP_0015 at 19.628 kb on + strand, within PP_0015 at 19.628 kb on + strand, within PP_0015 at 19.629 kb on - strand, within PP_0015 at 19.629 kb on - strand, within PP_0015 at 19.629 kb on - strand, within PP_0015 at 19.629 kb on - strand, within PP_0015 at 19.629 kb on - strand, within PP_0015 at 19.672 kb on + strand, within PP_0015 at 19.720 kb on - strand, within PP_0015 at 19.789 kb on + strand, within PP_0015 at 19.789 kb on + strand, within PP_0015 at 19.789 kb on + strand, within PP_0015 at 19.790 kb on - strand, within PP_0015 at 19.790 kb on - strand, within PP_0015 at 19.790 kb on - strand, within PP_0015 at 19.790 kb on - strand, within PP_0015 at 19.860 kb on + strand, within PP_0015 at 19.876 kb on + strand, within PP_0015 at 19.877 kb on - strand, within PP_0015 at 19.877 kb on - strand, within PP_0015 at 19.886 kb on + strand, within PP_0015 at 19.886 kb on + strand, within PP_0015 at 19.886 kb on + strand, within PP_0015 at 19.887 kb on - strand, within PP_0015 at 19.898 kb on + strand, within PP_0015 at 19.913 kb on + strand, within PP_0015 at 19.913 kb on + strand, within PP_0015 at 19.914 kb on - strand at 20.021 kb on + strand, within PP_0015 at 20.021 kb on + strand, within PP_0015 at 20.022 kb on - strand, within PP_0015 at 20.022 kb on - strand, within PP_0015 at 20.022 kb on - strand, within PP_0015 at 20.022 kb on - strand, within PP_0015 at 20.116 kb on + strand at 20.116 kb on + strand at 20.117 kb on - strand at 20.117 kb on - strand at 20.117 kb on - strand at 20.117 kb on - strand at 20.154 kb on + strand at 20.170 kb on - strand at 20.170 kb on - strand at 20.170 kb on - strand at 20.193 kb on + strand at 20.194 kb on - strand at 20.194 kb on - strand at 20.211 kb on + strand at 20.211 kb on + strand at 20.211 kb on + strand at 20.211 kb on + strand at 20.211 kb on + strand at 20.211 kb on + strand at 20.212 kb on - strand at 20.212 kb on - strand at 20.212 kb on - strand at 20.252 kb on + strand at 20.425 kb on - strand, within PP_0016 at 20.425 kb on - strand, within PP_0016 at 20.425 kb on - strand, within PP_0016 at 20.425 kb on - strand, within PP_0016 at 20.447 kb on + strand, within PP_0016 at 20.596 kb on + strand, within PP_0016 at 20.597 kb on - strand, within PP_0016 at 20.659 kb on + strand, within PP_0016 at 20.659 kb on + strand, within PP_0016 at 20.700 kb on - strand, within PP_0016 at 20.745 kb on - strand, within PP_0016 at 20.838 kb on + strand, within PP_0016 at 20.844 kb on + strand, within PP_0016 at 20.854 kb on + strand, within PP_0016 at 20.855 kb on - strand, within PP_0016 at 20.855 kb on - strand, within PP_0016 at 20.979 kb on + strand, within PP_0016 at 20.980 kb on - strand, within PP_0016 at 20.981 kb on + strand, within PP_0016 at 20.981 kb on + strand, within PP_0016 at 20.981 kb on + strand, within PP_0016 at 20.981 kb on + strand, within PP_0016 at 20.981 kb on + strand, within PP_0016 at 20.981 kb on + strand, within PP_0016 at 20.982 kb on - strand, within PP_0016 at 20.982 kb on - strand, within PP_0016 at 20.982 kb on - strand, within PP_0016 at 21.075 kb on + strand, within PP_0016 at 21.168 kb on + strand, within PP_0016 at 21.169 kb on - strand, within PP_0016 at 21.241 kb on + strand, within PP_0016 at 21.241 kb on + strand, within PP_0016 at 21.241 kb on + strand, within PP_0016 at 21.241 kb on + strand, within PP_0016 at 21.242 kb on - strand, within PP_0016 at 21.242 kb on - strand, within PP_0016 at 21.324 kb on + strand, within PP_0016 at 21.325 kb on - strand, within PP_0016 at 21.325 kb on - strand, within PP_0016 at 21.357 kb on + strand, within PP_0016 at 21.357 kb on + strand, within PP_0016 at 21.357 kb on + strand, within PP_0016 at 21.358 kb on - strand, within PP_0016 at 21.358 kb on - strand, within PP_0016 at 21.368 kb on - strand, within PP_0016 at 21.460 kb on + strand, within PP_0016 at 21.495 kb on - strand, within PP_0016 at 21.495 kb on - strand, within PP_0016 at 21.495 kb on - strand, within PP_0016 at 21.497 kb on - strand, within PP_0016 at 21.552 kb on + strand, within PP_0016 at 21.552 kb on + strand, within PP_0016 at 21.552 kb on + strand, within PP_0016 at 21.553 kb on - strand, within PP_0016 at 21.553 kb on - strand, within PP_0016 at 21.553 kb on - strand, within PP_0016 at 21.553 kb on - strand, within PP_0016 at 21.553 kb on - strand, within PP_0016 at 21.553 kb on - strand, within PP_0016 at 21.575 kb on + strand, within PP_0016 at 21.575 kb on + strand, within PP_0016 at 21.618 kb on + strand, within PP_0016 at 21.619 kb on - strand, within PP_0016 at 21.717 kb on + strand, within PP_0016 at 21.718 kb on - strand, within PP_0016 at 21.718 kb on - strand, within PP_0016 at 21.718 kb on - strand, within PP_0016 at 21.740 kb on + strand, within PP_0016 at 21.740 kb on + strand, within PP_0016 at 21.765 kb on + strand, within PP_0016 at 21.766 kb on - strand, within PP_0016 at 21.811 kb on + strand, within PP_0016 at 21.811 kb on + strand, within PP_0016 at 21.812 kb on - strand, within PP_0016 at 21.812 kb on - strand, within PP_0016 at 21.845 kb on + strand, within PP_0016 at 21.845 kb on + strand, within PP_0016 at 21.845 kb on + strand, within PP_0016 at 21.845 kb on + strand, within PP_0016 at 21.845 kb on + strand, within PP_0016 at 21.845 kb on + strand, within PP_0016 at 21.846 kb on - strand, within PP_0016 at 21.846 kb on - strand, within PP_0016 at 21.846 kb on - strand, within PP_0016 at 21.846 kb on - strand, within PP_0016 at 21.847 kb on + strand, within PP_0016 at 21.847 kb on + strand, within PP_0016 at 21.848 kb on - strand, within PP_0016 at 21.872 kb on + strand, within PP_0016 at 21.872 kb on + strand, within PP_0016 at 21.972 kb on - strand at 21.972 kb on - strand at 22.005 kb on - strand at 22.112 kb on + strand at 22.117 kb on - strand at 22.117 kb on - strand at 22.140 kb on + strand at 22.170 kb on + strand at 22.170 kb on + strand at 22.170 kb on + strand at 22.170 kb on + strand at 22.171 kb on - strand at 22.171 kb on - strand at 22.171 kb on - strand at 22.171 kb on - strand at 22.171 kb on - strand at 22.171 kb on - strand at 22.309 kb on + strand, within PP_0017 at 22.309 kb on + strand, within PP_0017 at 22.371 kb on + strand, within PP_0017 at 22.371 kb on + strand, within PP_0017 at 22.406 kb on + strand, within PP_0017 at 22.406 kb on + strand, within PP_0017 at 22.407 kb on - strand, within PP_0017 at 22.407 kb on - strand, within PP_0017 at 22.415 kb on - strand, within PP_0017 at 22.415 kb on - strand, within PP_0017 at 22.459 kb on - strand, within PP_0017 at 22.467 kb on + strand, within PP_0017 at 22.467 kb on + strand, within PP_0017 at 22.467 kb on + strand, within PP_0017 at 22.474 kb on - strand, within PP_0017 at 22.492 kb on + strand, within PP_0017 at 22.493 kb on - strand, within PP_0017 at 22.505 kb on + strand at 22.506 kb on - strand at 22.640 kb on + strand at 22.649 kb on + strand at 22.650 kb on - strand at 22.650 kb on - strand at 22.653 kb on + strand at 22.654 kb on - strand at 22.839 kb on + strand at 22.839 kb on + strand at 22.840 kb on - strand at 22.840 kb on - strand at 22.840 kb on - strand at 22.840 kb on - strand at 22.913 kb on - strand at 22.948 kb on + strand at 22.948 kb on + strand at 22.990 kb on + strand at 22.991 kb on - strand at 23.005 kb on + strand at 23.029 kb on + strand at 23.029 kb on + strand at 23.030 kb on - strand at 23.030 kb on - strand at 23.101 kb on + strand at 23.101 kb on + strand at 23.103 kb on + strand at 23.103 kb on + strand at 23.103 kb on + strand at 23.103 kb on + strand at 23.103 kb on + strand at 23.103 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 3-methyl-1-butanol 0.1 vol% (C) remove 19,205 + -1.2 19,205 + -2.0 19,206 - +0.2 19,206 - +0.6 19,206 - +0.8 19,213 + +0.1 19,213 + -0.7 19,213 + +1.0 19,213 + +1.4 19,213 + -0.0 19,214 - +1.4 19,231 + +0.6 19,232 - -0.7 19,269 + PP_0015 0.11 +0.0 19,270 - PP_0015 0.11 -0.6 19,309 + PP_0015 0.15 -0.7 19,309 + PP_0015 0.15 +0.4 19,310 - PP_0015 0.15 +1.5 19,367 + PP_0015 0.21 -1.1 19,367 + PP_0015 0.21 +0.0 19,367 + PP_0015 0.21 +1.5 19,368 - PP_0015 0.21 +0.7 19,368 - PP_0015 0.21 -1.0 19,529 - PP_0015 0.38 -0.8 19,529 - PP_0015 0.38 +0.5 19,542 + PP_0015 0.39 +0.2 19,543 - PP_0015 0.40 -0.3 19,610 + PP_0015 0.47 +0.2 19,618 + PP_0015 0.47 +0.7 19,618 + PP_0015 0.47 +1.4 19,618 + PP_0015 0.47 +1.4 19,619 - PP_0015 0.47 -0.0 19,619 - PP_0015 0.47 +1.2 19,619 - PP_0015 0.47 -2.0 19,628 + PP_0015 0.48 -0.8 19,628 + PP_0015 0.48 +0.4 19,629 - PP_0015 0.49 +2.1 19,629 - PP_0015 0.49 -0.1 19,629 - PP_0015 0.49 +0.2 19,629 - PP_0015 0.49 +1.6 19,629 - PP_0015 0.49 -1.6 19,672 + PP_0015 0.53 +0.2 19,720 - PP_0015 0.58 +1.8 19,789 + PP_0015 0.65 -0.1 19,789 + PP_0015 0.65 +0.3 19,789 + PP_0015 0.65 -0.1 19,790 - PP_0015 0.65 +0.7 19,790 - PP_0015 0.65 -0.7 19,790 - PP_0015 0.65 +0.8 19,790 - PP_0015 0.65 +1.0 19,860 + PP_0015 0.73 +0.1 19,876 + PP_0015 0.74 +0.1 19,877 - PP_0015 0.74 +0.5 19,877 - PP_0015 0.74 +2.4 19,886 + PP_0015 0.75 +0.7 19,886 + PP_0015 0.75 -2.0 19,886 + PP_0015 0.75 -1.2 19,887 - PP_0015 0.75 -0.8 19,898 + PP_0015 0.77 +0.2 19,913 + PP_0015 0.78 +2.6 19,913 + PP_0015 0.78 -0.3 19,914 - +1.0 20,021 + PP_0015 0.89 -3.5 20,021 + PP_0015 0.89 +0.5 20,022 - PP_0015 0.89 +1.8 20,022 - PP_0015 0.89 +0.6 20,022 - PP_0015 0.89 +1.5 20,022 - PP_0015 0.89 +0.4 20,116 + +2.3 20,116 + -1.8 20,117 - +1.5 20,117 - +0.6 20,117 - +0.6 20,117 - +2.0 20,154 + -2.2 20,170 - +1.0 20,170 - -0.5 20,170 - +1.2 20,193 + -0.7 20,194 - +0.7 20,194 - +1.8 20,211 + +1.2 20,211 + -1.0 20,211 + -0.7 20,211 + -1.9 20,211 + +0.2 20,211 + -0.7 20,212 - +0.4 20,212 - -0.8 20,212 - -1.0 20,252 + -0.3 20,425 - PP_0016 0.12 +0.9 20,425 - PP_0016 0.12 +1.2 20,425 - PP_0016 0.12 +0.6 20,425 - PP_0016 0.12 +2.1 20,447 + PP_0016 0.13 -2.1 20,596 + PP_0016 0.21 -0.3 20,597 - PP_0016 0.21 -1.7 20,659 + PP_0016 0.24 -4.5 20,659 + PP_0016 0.24 -1.5 20,700 - PP_0016 0.26 -0.6 20,745 - PP_0016 0.29 +1.8 20,838 + PP_0016 0.33 -0.4 20,844 + PP_0016 0.34 -1.3 20,854 + PP_0016 0.34 +0.5 20,855 - PP_0016 0.34 +1.8 20,855 - PP_0016 0.34 -0.4 20,979 + PP_0016 0.41 +0.7 20,980 - PP_0016 0.41 +1.7 20,981 + PP_0016 0.41 +0.2 20,981 + PP_0016 0.41 +1.5 20,981 + PP_0016 0.41 +0.3 20,981 + PP_0016 0.41 +1.6 20,981 + PP_0016 0.41 +1.7 20,981 + PP_0016 0.41 -0.1 20,982 - PP_0016 0.41 +0.9 20,982 - PP_0016 0.41 +2.8 20,982 - PP_0016 0.41 +1.2 21,075 + PP_0016 0.46 -0.6 21,168 + PP_0016 0.51 +0.3 21,169 - PP_0016 0.51 -0.7 21,241 + PP_0016 0.54 -0.3 21,241 + PP_0016 0.54 +1.7 21,241 + PP_0016 0.54 +1.6 21,241 + PP_0016 0.54 -0.2 21,242 - PP_0016 0.54 +0.8 21,242 - PP_0016 0.54 -0.1 21,324 + PP_0016 0.59 +1.0 21,325 - PP_0016 0.59 +0.0 21,325 - PP_0016 0.59 +1.3 21,357 + PP_0016 0.60 -0.1 21,357 + PP_0016 0.60 -0.9 21,357 + PP_0016 0.60 +0.4 21,358 - PP_0016 0.61 +1.1 21,358 - PP_0016 0.61 +0.8 21,368 - PP_0016 0.61 +1.8 21,460 + PP_0016 0.66 -0.9 21,495 - PP_0016 0.68 +0.6 21,495 - PP_0016 0.68 +0.7 21,495 - PP_0016 0.68 +0.8 21,497 - PP_0016 0.68 +0.3 21,552 + PP_0016 0.71 +1.3 21,552 + PP_0016 0.71 +1.3 21,552 + PP_0016 0.71 +0.3 21,553 - PP_0016 0.71 +1.5 21,553 - PP_0016 0.71 +1.4 21,553 - PP_0016 0.71 +0.7 21,553 - PP_0016 0.71 +1.4 21,553 - PP_0016 0.71 +0.2 21,553 - PP_0016 0.71 -0.0 21,575 + PP_0016 0.72 +0.5 21,575 + PP_0016 0.72 -0.0 21,618 + PP_0016 0.74 -3.1 21,619 - PP_0016 0.74 +2.6 21,717 + PP_0016 0.79 +0.4 21,718 - PP_0016 0.79 +1.4 21,718 - PP_0016 0.79 -0.5 21,718 - PP_0016 0.79 +1.6 21,740 + PP_0016 0.80 -1.8 21,740 + PP_0016 0.80 -0.9 21,765 + PP_0016 0.82 -0.7 21,766 - PP_0016 0.82 -0.2 21,811 + PP_0016 0.84 -1.0 21,811 + PP_0016 0.84 -3.0 21,812 - PP_0016 0.84 +0.3 21,812 - PP_0016 0.84 +1.8 21,845 + PP_0016 0.86 -0.7 21,845 + PP_0016 0.86 -0.8 21,845 + PP_0016 0.86 -0.7 21,845 + PP_0016 0.86 +0.5 21,845 + PP_0016 0.86 -0.5 21,845 + PP_0016 0.86 +1.0 21,846 - PP_0016 0.86 +0.6 21,846 - PP_0016 0.86 +0.6 21,846 - PP_0016 0.86 +0.7 21,846 - PP_0016 0.86 +1.0 21,847 + PP_0016 0.86 +0.8 21,847 + PP_0016 0.86 -0.0 21,848 - PP_0016 0.86 +1.0 21,872 + PP_0016 0.87 +0.1 21,872 + PP_0016 0.87 +0.5 21,972 - +0.2 21,972 - +1.2 22,005 - -0.6 22,112 + +0.2 22,117 - +1.0 22,117 - +1.1 22,140 + -0.6 22,170 + -1.3 22,170 + +1.1 22,170 + -0.2 22,170 + -0.0 22,171 - +1.0 22,171 - +1.5 22,171 - +0.1 22,171 - +1.4 22,171 - +1.8 22,171 - +0.8 22,309 + PP_0017 0.38 -0.9 22,309 + PP_0017 0.38 +0.5 22,371 + PP_0017 0.56 +2.3 22,371 + PP_0017 0.56 +1.4 22,406 + PP_0017 0.65 +1.4 22,406 + PP_0017 0.65 -0.5 22,407 - PP_0017 0.66 +1.8 22,407 - PP_0017 0.66 +1.8 22,415 - PP_0017 0.68 +2.7 22,415 - PP_0017 0.68 -0.0 22,459 - PP_0017 0.80 +0.8 22,467 + PP_0017 0.82 -0.7 22,467 + PP_0017 0.82 +1.1 22,467 + PP_0017 0.82 +0.4 22,474 - PP_0017 0.84 -0.4 22,492 + PP_0017 0.89 +0.3 22,493 - PP_0017 0.89 +0.2 22,505 + +0.2 22,506 - +0.6 22,640 + +0.6 22,649 + +1.0 22,650 - +0.9 22,650 - +0.8 22,653 + -0.5 22,654 - +0.1 22,839 + +2.6 22,839 + -0.5 22,840 - +1.0 22,840 - +0.6 22,840 - -0.3 22,840 - +1.4 22,913 - +0.2 22,948 + +1.4 22,948 + +1.3 22,990 + +0.6 22,991 - +0.4 23,005 + +1.4 23,029 + +1.4 23,029 + +1.2 23,030 - -1.0 23,030 - +0.6 23,101 + +1.6 23,101 + +1.6 23,103 + +0.6 23,103 + +1.6 23,103 + +0.9 23,103 + +0.5 23,103 + +0.7 23,103 + +0.7
Or see this region's nucleotide sequence