Experiment: Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03805 and PS417_03810 overlap by 14 nucleotides PS417_03810 and PS417_03815 are separated by 124 nucleotides PS417_03815 and PS417_03820 are separated by 149 nucleotides
PS417_03805: PS417_03805 - D-amino acid oxidase, at 858,953 to 860,062
_03805
PS417_03810: PS417_03810 - hypothetical protein, at 860,049 to 860,282
_03810
PS417_03815: PS417_03815 - DNA transporter, at 860,407 to 861,432
_03815
PS417_03820: PS417_03820 - ribosomal large subunit pseudouridine synthase D, at 861,582 to 862,544
_03820
Position (kb) 860
861
862 Strain fitness (log2 ratio) -2
-1
0
1 at 859.506 kb on + strand, within PS417_03805 at 859.506 kb on + strand, within PS417_03805 at 859.507 kb on - strand, within PS417_03805 at 859.507 kb on - strand, within PS417_03805 at 859.592 kb on - strand, within PS417_03805 at 859.592 kb on - strand, within PS417_03805 at 859.592 kb on - strand, within PS417_03805 at 859.889 kb on + strand, within PS417_03805 at 859.889 kb on + strand, within PS417_03805 at 859.890 kb on - strand, within PS417_03805 at 859.890 kb on - strand, within PS417_03805 at 859.890 kb on - strand, within PS417_03805 at 859.890 kb on - strand, within PS417_03805 at 859.890 kb on - strand, within PS417_03805 at 860.061 kb on - strand at 860.099 kb on - strand, within PS417_03810 at 860.099 kb on - strand, within PS417_03810 at 860.239 kb on - strand at 860.348 kb on + strand at 860.349 kb on - strand at 860.349 kb on - strand at 860.349 kb on - strand at 860.433 kb on - strand at 860.433 kb on - strand at 860.552 kb on + strand, within PS417_03815 at 860.630 kb on + strand, within PS417_03815 at 860.631 kb on - strand, within PS417_03815 at 860.631 kb on - strand, within PS417_03815 at 860.631 kb on - strand, within PS417_03815 at 860.631 kb on - strand, within PS417_03815 at 861.572 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 859,506 + PS417_03805 0.50 +0.2 859,506 + PS417_03805 0.50 -0.7 859,507 - PS417_03805 0.50 -0.2 859,507 - PS417_03805 0.50 +0.3 859,592 - PS417_03805 0.58 -2.5 859,592 - PS417_03805 0.58 +0.4 859,592 - PS417_03805 0.58 -0.2 859,889 + PS417_03805 0.84 -1.1 859,889 + PS417_03805 0.84 +0.0 859,890 - PS417_03805 0.84 -0.8 859,890 - PS417_03805 0.84 +0.0 859,890 - PS417_03805 0.84 +0.3 859,890 - PS417_03805 0.84 +0.6 859,890 - PS417_03805 0.84 -0.2 860,061 - -0.0 860,099 - PS417_03810 0.21 +0.8 860,099 - PS417_03810 0.21 -0.3 860,239 - +1.0 860,348 + +0.5 860,349 - -1.9 860,349 - -0.1 860,349 - -0.0 860,433 - -0.4 860,433 - -2.0 860,552 + PS417_03815 0.14 -1.8 860,630 + PS417_03815 0.22 -1.3 860,631 - PS417_03815 0.22 -0.8 860,631 - PS417_03815 0.22 -0.9 860,631 - PS417_03815 0.22 -0.5 860,631 - PS417_03815 0.22 +1.5 861,572 + +0.5
Or see this region's nucleotide sequence