Experiment: Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03035 and PS417_03040 are separated by 24 nucleotides PS417_03040 and PS417_03045 are separated by 45 nucleotides PS417_03045 and PS417_03050 are separated by 155 nucleotides
PS417_03035: PS417_03035 - SAM-dependent methyltransferase, at 698,644 to 699,393
_03035
PS417_03040: PS417_03040 - hypothetical protein, at 699,418 to 700,020
_03040
PS417_03045: PS417_03045 - hypothetical protein, at 700,066 to 700,623
_03045
PS417_03050: PS417_03050 - hypothetical protein, at 700,779 to 702,725
_03050
Position (kb) 700
701 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 699.168 kb on + strand, within PS417_03035 at 699.169 kb on - strand, within PS417_03035 at 699.265 kb on + strand, within PS417_03035 at 699.265 kb on + strand, within PS417_03035 at 699.265 kb on + strand, within PS417_03035 at 699.265 kb on + strand, within PS417_03035 at 699.265 kb on + strand, within PS417_03035 at 699.266 kb on - strand, within PS417_03035 at 699.266 kb on - strand, within PS417_03035 at 699.266 kb on - strand, within PS417_03035 at 699.266 kb on - strand, within PS417_03035 at 699.267 kb on + strand, within PS417_03035 at 699.267 kb on + strand, within PS417_03035 at 699.267 kb on + strand, within PS417_03035 at 699.267 kb on + strand, within PS417_03035 at 699.268 kb on - strand, within PS417_03035 at 699.268 kb on - strand, within PS417_03035 at 699.268 kb on - strand, within PS417_03035 at 699.268 kb on - strand, within PS417_03035 at 699.365 kb on - strand at 699.368 kb on + strand at 699.392 kb on - strand at 699.571 kb on + strand, within PS417_03040 at 699.572 kb on - strand, within PS417_03040 at 699.585 kb on + strand, within PS417_03040 at 699.586 kb on - strand, within PS417_03040 at 699.826 kb on + strand, within PS417_03040 at 699.826 kb on + strand, within PS417_03040 at 699.826 kb on + strand, within PS417_03040 at 699.827 kb on - strand, within PS417_03040 at 699.853 kb on + strand, within PS417_03040 at 699.853 kb on + strand, within PS417_03040 at 699.853 kb on + strand, within PS417_03040 at 699.854 kb on - strand, within PS417_03040 at 699.854 kb on - strand, within PS417_03040 at 700.084 kb on - strand at 700.381 kb on + strand, within PS417_03045 at 700.432 kb on + strand, within PS417_03045 at 700.689 kb on + strand at 700.690 kb on - strand at 700.735 kb on - strand at 700.735 kb on - strand at 700.735 kb on - strand at 700.750 kb on + strand at 700.750 kb on + strand at 700.751 kb on - strand at 700.751 kb on - strand at 700.859 kb on + strand at 700.860 kb on - strand at 700.917 kb on - strand at 700.989 kb on + strand, within PS417_03050 at 701.418 kb on + strand, within PS417_03050 at 701.573 kb on + strand, within PS417_03050 at 701.609 kb on - strand, within PS417_03050
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 699,168 + PS417_03035 0.70 -3.7 699,169 - PS417_03035 0.70 +1.0 699,265 + PS417_03035 0.83 -0.2 699,265 + PS417_03035 0.83 -2.0 699,265 + PS417_03035 0.83 +1.4 699,265 + PS417_03035 0.83 -0.4 699,265 + PS417_03035 0.83 +0.7 699,266 - PS417_03035 0.83 +0.6 699,266 - PS417_03035 0.83 +0.2 699,266 - PS417_03035 0.83 +0.8 699,266 - PS417_03035 0.83 -1.8 699,267 + PS417_03035 0.83 +0.2 699,267 + PS417_03035 0.83 +1.3 699,267 + PS417_03035 0.83 +0.8 699,267 + PS417_03035 0.83 -0.0 699,268 - PS417_03035 0.83 +0.3 699,268 - PS417_03035 0.83 +0.4 699,268 - PS417_03035 0.83 -0.2 699,268 - PS417_03035 0.83 +0.3 699,365 - +1.6 699,368 + +0.4 699,392 - -0.6 699,571 + PS417_03040 0.25 -0.8 699,572 - PS417_03040 0.26 +0.2 699,585 + PS417_03040 0.28 -0.8 699,586 - PS417_03040 0.28 -0.2 699,826 + PS417_03040 0.68 -0.0 699,826 + PS417_03040 0.68 -0.3 699,826 + PS417_03040 0.68 -0.6 699,827 - PS417_03040 0.68 -0.1 699,853 + PS417_03040 0.72 -0.2 699,853 + PS417_03040 0.72 +0.9 699,853 + PS417_03040 0.72 +0.4 699,854 - PS417_03040 0.72 +0.2 699,854 - PS417_03040 0.72 -0.2 700,084 - -1.4 700,381 + PS417_03045 0.56 -1.2 700,432 + PS417_03045 0.66 -1.0 700,689 + -0.2 700,690 - +0.6 700,735 - +0.7 700,735 - -0.0 700,735 - -0.7 700,750 + -0.1 700,750 + -0.6 700,751 - +2.6 700,751 - -0.9 700,859 + -0.5 700,860 - -0.7 700,917 - +1.0 700,989 + PS417_03050 0.11 +0.4 701,418 + PS417_03050 0.33 +0.3 701,573 + PS417_03050 0.41 +0.9 701,609 - PS417_03050 0.43 +0.9
Or see this region's nucleotide sequence