Experiment: Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02985 and PS417_02990 are separated by 298 nucleotides PS417_02990 and PS417_02995 are separated by 2 nucleotides PS417_02995 and PS417_03000 are separated by 182 nucleotides
PS417_02985: PS417_02985 - diguanylate cyclase, at 682,518 to 684,188
_02985
PS417_02990: PS417_02990 - hypothetical protein, at 684,487 to 685,554
_02990
PS417_02995: PS417_02995 - NUDIX hydrolase, at 685,557 to 686,093
_02995
PS417_03000: PS417_03000 - translation initiation factor Sui1, at 686,276 to 686,647
_03000
Position (kb) 684
685
686 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 683.812 kb on + strand, within PS417_02985 at 683.812 kb on + strand, within PS417_02985 at 684.198 kb on - strand at 684.200 kb on + strand at 684.201 kb on - strand at 684.201 kb on - strand at 684.201 kb on - strand at 684.236 kb on - strand at 684.270 kb on + strand at 684.271 kb on - strand at 684.271 kb on - strand at 684.279 kb on - strand at 684.346 kb on + strand at 684.347 kb on - strand at 684.348 kb on + strand at 684.349 kb on - strand at 684.560 kb on - strand at 684.610 kb on + strand, within PS417_02990 at 684.727 kb on + strand, within PS417_02990 at 684.728 kb on - strand, within PS417_02990 at 684.729 kb on + strand, within PS417_02990 at 685.081 kb on + strand, within PS417_02990 at 685.283 kb on - strand, within PS417_02990 at 685.496 kb on - strand at 685.496 kb on - strand at 685.702 kb on + strand, within PS417_02995 at 685.703 kb on - strand, within PS417_02995 at 685.819 kb on - strand, within PS417_02995 at 685.897 kb on - strand, within PS417_02995 at 685.928 kb on + strand, within PS417_02995 at 685.928 kb on + strand, within PS417_02995 at 685.929 kb on - strand, within PS417_02995 at 685.999 kb on + strand, within PS417_02995 at 685.999 kb on + strand, within PS417_02995 at 686.040 kb on + strand at 686.041 kb on - strand at 686.041 kb on - strand at 686.102 kb on - strand at 686.102 kb on - strand at 686.124 kb on - strand at 686.145 kb on + strand at 686.320 kb on - strand, within PS417_03000 at 686.320 kb on - strand, within PS417_03000 at 686.378 kb on - strand, within PS417_03000 at 686.378 kb on - strand, within PS417_03000
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 683,812 + PS417_02985 0.77 -0.0 683,812 + PS417_02985 0.77 -0.7 684,198 - -0.8 684,200 + -2.2 684,201 - +0.7 684,201 - -0.3 684,201 - +0.1 684,236 - -0.1 684,270 + +0.0 684,271 - -1.2 684,271 - -0.5 684,279 - +0.5 684,346 + +1.0 684,347 - +0.3 684,348 + -1.8 684,349 - -2.4 684,560 - -0.2 684,610 + PS417_02990 0.12 +3.6 684,727 + PS417_02990 0.22 -0.3 684,728 - PS417_02990 0.23 -0.3 684,729 + PS417_02990 0.23 -0.6 685,081 + PS417_02990 0.56 -2.1 685,283 - PS417_02990 0.75 -2.0 685,496 - +0.4 685,496 - -1.5 685,702 + PS417_02995 0.27 -1.2 685,703 - PS417_02995 0.27 -1.3 685,819 - PS417_02995 0.49 +2.3 685,897 - PS417_02995 0.63 -0.6 685,928 + PS417_02995 0.69 +0.3 685,928 + PS417_02995 0.69 -0.7 685,929 - PS417_02995 0.69 -0.3 685,999 + PS417_02995 0.82 -0.8 685,999 + PS417_02995 0.82 +0.7 686,040 + -0.0 686,041 - -0.6 686,041 - +0.4 686,102 - +0.4 686,102 - +0.0 686,124 - +1.0 686,145 + -0.2 686,320 - PS417_03000 0.12 -0.4 686,320 - PS417_03000 0.12 -0.4 686,378 - PS417_03000 0.27 +0.2 686,378 - PS417_03000 0.27 +1.2
Or see this region's nucleotide sequence