Experiment: Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02810 and PS417_02815 are separated by 31 nucleotides PS417_02815 and PS417_02820 are separated by 12 nucleotides PS417_02820 and PS417_02825 are separated by 8 nucleotides
PS417_02810: PS417_02810 - urease accessory protein UreD, at 636,914 to 637,753
_02810
PS417_02815: PS417_02815 - urea ABC transporter ATP-binding protein, at 637,785 to 638,483
_02815
PS417_02820: PS417_02820 - urea ABC transporter ATP-binding protein, at 638,496 to 639,317
_02820
PS417_02825: PS417_02825 - amino acid ABC transporter permease, at 639,326 to 640,393
_02825
Position (kb) 637
638
639 Strain fitness (log2 ratio) -2
-1
0
1 at 636.814 kb on + strand at 636.814 kb on + strand at 636.815 kb on - strand at 636.815 kb on - strand at 637.806 kb on + strand at 637.806 kb on + strand at 637.806 kb on + strand at 637.806 kb on + strand at 637.806 kb on + strand at 637.874 kb on - strand, within PS417_02815 at 637.903 kb on + strand, within PS417_02815 at 637.904 kb on - strand, within PS417_02815 at 638.134 kb on + strand, within PS417_02815 at 638.456 kb on - strand at 638.509 kb on + strand at 638.877 kb on + strand, within PS417_02820 at 638.981 kb on + strand, within PS417_02820 at 639.157 kb on + strand, within PS417_02820 at 639.363 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 636,814 + +0.2 636,814 + +1.4 636,815 - -2.4 636,815 - +0.4 637,806 + -1.1 637,806 + -0.7 637,806 + +0.2 637,806 + +0.2 637,806 + -2.6 637,874 - PS417_02815 0.13 -2.2 637,903 + PS417_02815 0.17 +0.7 637,904 - PS417_02815 0.17 -0.2 638,134 + PS417_02815 0.50 -1.2 638,456 - -1.3 638,509 + -0.6 638,877 + PS417_02820 0.46 -1.7 638,981 + PS417_02820 0.59 -0.6 639,157 + PS417_02820 0.80 -0.3 639,363 + +0.2
Or see this region's nucleotide sequence