Experiment: Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02730 and PS417_02735 are separated by 201 nucleotides PS417_02735 and PS417_02740 are separated by 98 nucleotides PS417_02740 and PS417_02745 are separated by 136 nucleotides PS417_02745 and PS417_02750 are separated by 80 nucleotides
PS417_02730: PS417_02730 - hypothetical protein, at 621,731 to 623,800
_02730
PS417_02735: PS417_02735 - bacterioferritin, at 624,002 to 624,532
_02735
PS417_02740: PS417_02740 - LysR family transcriptional regulator, at 624,631 to 625,530
_02740
PS417_02745: PS417_02745 - FMN-dependent NADH-azoreductase, at 625,667 to 626,308
_02745
PS417_02750: PS417_02750 - alpha/beta hydrolase, at 626,389 to 627,279
_02750
Position (kb) 624
625
626 Strain fitness (log2 ratio) -2
-1
0
1
2 at 623.830 kb on + strand at 623.883 kb on + strand at 623.884 kb on - strand at 623.896 kb on - strand at 623.902 kb on + strand at 623.902 kb on + strand at 623.903 kb on - strand at 623.903 kb on - strand at 623.903 kb on - strand at 623.933 kb on - strand at 623.949 kb on + strand at 623.950 kb on - strand at 624.003 kb on + strand at 624.020 kb on - strand at 624.094 kb on + strand, within PS417_02735 at 624.105 kb on + strand, within PS417_02735 at 624.105 kb on + strand, within PS417_02735 at 624.105 kb on + strand, within PS417_02735 at 624.106 kb on - strand, within PS417_02735 at 624.106 kb on - strand, within PS417_02735 at 624.106 kb on - strand, within PS417_02735 at 624.163 kb on - strand, within PS417_02735 at 624.196 kb on - strand, within PS417_02735 at 624.263 kb on - strand, within PS417_02735 at 624.360 kb on + strand, within PS417_02735 at 624.380 kb on + strand, within PS417_02735 at 624.381 kb on - strand, within PS417_02735 at 624.546 kb on + strand at 625.028 kb on + strand, within PS417_02740 at 625.028 kb on + strand, within PS417_02740 at 625.029 kb on - strand, within PS417_02740 at 625.663 kb on - strand at 626.186 kb on + strand, within PS417_02745 at 626.187 kb on - strand, within PS417_02745 at 626.187 kb on - strand at 626.247 kb on + strand at 626.247 kb on + strand at 626.248 kb on - strand at 626.248 kb on - strand at 626.261 kb on + strand at 626.261 kb on + strand at 626.262 kb on - strand at 626.307 kb on - strand at 626.347 kb on + strand at 626.348 kb on - strand at 626.358 kb on + strand at 626.358 kb on + strand at 626.359 kb on - strand at 626.359 kb on - strand at 626.359 kb on - strand at 626.361 kb on + strand at 626.361 kb on + strand at 626.361 kb on + strand at 626.362 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 623,830 + +0.3 623,883 + -0.1 623,884 - +0.6 623,896 - +0.6 623,902 + +1.1 623,902 + +1.5 623,903 - +0.6 623,903 - +0.1 623,903 - -0.2 623,933 - -1.4 623,949 + -0.7 623,950 - +1.3 624,003 + -1.1 624,020 - +1.3 624,094 + PS417_02735 0.17 -0.7 624,105 + PS417_02735 0.19 +1.8 624,105 + PS417_02735 0.19 +0.3 624,105 + PS417_02735 0.19 -0.6 624,106 - PS417_02735 0.20 -0.0 624,106 - PS417_02735 0.20 +0.3 624,106 - PS417_02735 0.20 -1.0 624,163 - PS417_02735 0.30 -0.1 624,196 - PS417_02735 0.37 +0.5 624,263 - PS417_02735 0.49 -2.6 624,360 + PS417_02735 0.67 -0.7 624,380 + PS417_02735 0.71 +0.1 624,381 - PS417_02735 0.71 -0.4 624,546 + +0.5 625,028 + PS417_02740 0.44 -0.5 625,028 + PS417_02740 0.44 -0.7 625,029 - PS417_02740 0.44 +0.0 625,663 - +1.3 626,186 + PS417_02745 0.81 +2.0 626,187 - PS417_02745 0.81 +0.5 626,187 - +0.8 626,247 + -0.7 626,247 + +1.9 626,248 - -0.0 626,248 - +0.2 626,261 + -1.5 626,261 + -1.0 626,262 - +0.6 626,307 - +0.4 626,347 + +1.0 626,348 - -2.6 626,358 + -1.1 626,358 + +0.4 626,359 - +1.2 626,359 - +0.0 626,359 - -0.2 626,361 + -0.7 626,361 + -1.8 626,361 + -0.4 626,362 - -1.0
Or see this region's nucleotide sequence