Experiment: Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26180 and PS417_26185 overlap by 4 nucleotides PS417_26185 and PS417_26190 are separated by 15 nucleotides PS417_26190 and PS417_26195 are separated by 22 nucleotides
PS417_26180: PS417_26180 - sarcosine oxidase subunit alpha, at 5,656,055 to 5,659,072
_26180
PS417_26185: PS417_26185 - sarcosine oxidase subunit delta, at 5,659,069 to 5,659,371
_26185
PS417_26190: PS417_26190 - sarcosine oxidase subunit beta, at 5,659,387 to 5,660,637
_26190
PS417_26195: PS417_26195 - serine hydroxymethyltransferase, at 5,660,660 to 5,661,913
_26195
Position (kb) 5659
5660
5661 Strain fitness (log2 ratio) -2
-1
0
1 at 5658.583 kb on - strand, within PS417_26180 at 5658.639 kb on + strand, within PS417_26180 at 5658.640 kb on - strand, within PS417_26180 at 5658.690 kb on + strand, within PS417_26180 at 5658.690 kb on + strand, within PS417_26180 at 5658.795 kb on + strand at 5658.796 kb on - strand at 5659.025 kb on - strand at 5659.124 kb on + strand, within PS417_26185 at 5659.124 kb on + strand, within PS417_26185 at 5659.143 kb on - strand, within PS417_26185 at 5659.172 kb on + strand, within PS417_26185 at 5659.172 kb on + strand, within PS417_26185 at 5659.172 kb on + strand, within PS417_26185 at 5659.244 kb on + strand, within PS417_26185 at 5659.245 kb on - strand, within PS417_26185 at 5659.245 kb on - strand, within PS417_26185 at 5659.362 kb on + strand at 5659.362 kb on + strand at 5659.363 kb on - strand at 5659.371 kb on + strand at 5659.737 kb on - strand, within PS417_26190 at 5659.790 kb on + strand, within PS417_26190 at 5659.791 kb on - strand, within PS417_26190 at 5660.313 kb on - strand, within PS417_26190 at 5660.360 kb on + strand, within PS417_26190 at 5660.387 kb on + strand, within PS417_26190 at 5660.387 kb on + strand, within PS417_26190 at 5660.489 kb on + strand, within PS417_26190 at 5660.628 kb on - strand at 5661.055 kb on - strand, within PS417_26195 at 5661.416 kb on - strand, within PS417_26195 at 5661.597 kb on + strand, within PS417_26195 at 5661.598 kb on - strand, within PS417_26195 at 5661.598 kb on - strand, within PS417_26195 at 5661.598 kb on - strand, within PS417_26195
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 5,658,583 - PS417_26180 0.84 +0.0 5,658,639 + PS417_26180 0.86 -1.8 5,658,640 - PS417_26180 0.86 -0.5 5,658,690 + PS417_26180 0.87 -0.2 5,658,690 + PS417_26180 0.87 +0.0 5,658,795 + +0.9 5,658,796 - -1.8 5,659,025 - +0.5 5,659,124 + PS417_26185 0.18 +0.4 5,659,124 + PS417_26185 0.18 +0.9 5,659,143 - PS417_26185 0.24 -1.1 5,659,172 + PS417_26185 0.34 -0.4 5,659,172 + PS417_26185 0.34 -1.4 5,659,172 + PS417_26185 0.34 -0.1 5,659,244 + PS417_26185 0.58 -0.1 5,659,245 - PS417_26185 0.58 -2.6 5,659,245 - PS417_26185 0.58 +0.7 5,659,362 + +0.2 5,659,362 + -0.6 5,659,363 - -0.3 5,659,371 + -0.1 5,659,737 - PS417_26190 0.28 -0.0 5,659,790 + PS417_26190 0.32 -0.9 5,659,791 - PS417_26190 0.32 -1.2 5,660,313 - PS417_26190 0.74 -0.6 5,660,360 + PS417_26190 0.78 -1.3 5,660,387 + PS417_26190 0.80 -0.1 5,660,387 + PS417_26190 0.80 +0.3 5,660,489 + PS417_26190 0.88 -0.9 5,660,628 - -0.2 5,661,055 - PS417_26195 0.31 +0.0 5,661,416 - PS417_26195 0.60 -0.2 5,661,597 + PS417_26195 0.75 -0.0 5,661,598 - PS417_26195 0.75 -0.2 5,661,598 - PS417_26195 0.75 +0.9 5,661,598 - PS417_26195 0.75 +0.2
Or see this region's nucleotide sequence