Experiment: Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00195 and PS417_00200 are separated by 156 nucleotides PS417_00200 and PS417_00205 are separated by 115 nucleotides PS417_00205 and PS417_00210 are separated by 59 nucleotides PS417_00210 and PS417_00215 are separated by 217 nucleotides PS417_00215 and PS417_00220 are separated by 235 nucleotides
PS417_00195: PS417_00195 - hypothetical protein, at 40,956 to 41,282
_00195
PS417_00200: PS417_00200 - hypothetical protein, at 41,439 to 41,654
_00200
PS417_00205: PS417_00205 - hypothetical protein, at 41,770 to 41,997
_00205
PS417_00210: PS417_00210 - hypothetical protein, at 42,057 to 43,058
_00210
PS417_00215: PS417_00215 - peroxiredoxin OsmC, at 43,276 to 43,707
_00215
PS417_00220: PS417_00220 - hypothetical protein, at 43,943 to 44,182
_00220
Position (kb) 42
43
44 Strain fitness (log2 ratio) -2
-1
0
1
2 at 41.316 kb on + strand at 41.316 kb on + strand at 41.316 kb on + strand at 41.316 kb on + strand at 41.316 kb on + strand at 41.316 kb on + strand at 41.317 kb on - strand at 41.317 kb on - strand at 41.320 kb on + strand at 41.351 kb on - strand at 41.351 kb on - strand at 41.351 kb on - strand at 41.355 kb on - strand at 41.390 kb on + strand at 41.417 kb on + strand at 41.417 kb on + strand at 41.458 kb on - strand at 41.458 kb on - strand at 41.648 kb on + strand at 41.648 kb on + strand at 41.649 kb on - strand at 41.702 kb on - strand at 41.745 kb on + strand at 41.764 kb on + strand at 41.764 kb on + strand at 41.793 kb on - strand, within PS417_00205 at 42.347 kb on - strand, within PS417_00210 at 42.347 kb on - strand, within PS417_00210 at 42.534 kb on + strand, within PS417_00210 at 42.534 kb on + strand, within PS417_00210 at 42.534 kb on + strand, within PS417_00210 at 42.535 kb on - strand, within PS417_00210 at 42.623 kb on - strand, within PS417_00210 at 42.623 kb on - strand, within PS417_00210 at 42.902 kb on + strand, within PS417_00210 at 42.902 kb on + strand, within PS417_00210 at 42.903 kb on - strand, within PS417_00210 at 42.903 kb on - strand, within PS417_00210 at 42.934 kb on + strand, within PS417_00210 at 43.039 kb on - strand at 43.059 kb on - strand at 43.059 kb on - strand at 43.143 kb on + strand at 43.144 kb on - strand at 43.146 kb on - strand at 43.276 kb on - strand at 43.281 kb on + strand at 43.281 kb on + strand at 43.338 kb on + strand, within PS417_00215 at 43.339 kb on - strand, within PS417_00215 at 43.339 kb on - strand, within PS417_00215 at 43.361 kb on + strand, within PS417_00215 at 43.362 kb on - strand, within PS417_00215 at 43.526 kb on + strand, within PS417_00215 at 43.526 kb on + strand, within PS417_00215 at 43.527 kb on - strand, within PS417_00215 at 43.665 kb on - strand at 43.700 kb on + strand at 43.700 kb on + strand at 43.701 kb on - strand at 43.716 kb on + strand at 43.717 kb on - strand at 43.841 kb on + strand at 43.841 kb on + strand at 43.841 kb on + strand at 43.841 kb on + strand at 43.841 kb on + strand at 43.842 kb on - strand at 43.845 kb on + strand at 43.846 kb on - strand at 43.852 kb on + strand at 43.885 kb on + strand at 43.885 kb on + strand at 43.885 kb on + strand at 43.885 kb on + strand at 43.886 kb on - strand at 43.886 kb on - strand at 43.887 kb on + strand at 43.892 kb on + strand at 43.893 kb on - strand at 43.893 kb on - strand at 43.902 kb on - strand at 43.977 kb on + strand, within PS417_00220
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 41,316 + +0.2 41,316 + -0.4 41,316 + -0.1 41,316 + +1.1 41,316 + -0.7 41,316 + -0.1 41,317 - -0.0 41,317 - -0.4 41,320 + -0.3 41,351 - -0.7 41,351 - -0.8 41,351 - -1.5 41,355 - +0.5 41,390 + +0.4 41,417 + +0.2 41,417 + -0.9 41,458 - +1.0 41,458 - -1.1 41,648 + +0.4 41,648 + -0.8 41,649 - +0.6 41,702 - +0.1 41,745 + -0.9 41,764 + -0.4 41,764 + -2.5 41,793 - PS417_00205 0.10 +1.4 42,347 - PS417_00210 0.29 -1.5 42,347 - PS417_00210 0.29 -0.8 42,534 + PS417_00210 0.48 -0.0 42,534 + PS417_00210 0.48 -2.6 42,534 + PS417_00210 0.48 +1.3 42,535 - PS417_00210 0.48 -0.9 42,623 - PS417_00210 0.56 -0.9 42,623 - PS417_00210 0.56 -0.5 42,902 + PS417_00210 0.84 -0.8 42,902 + PS417_00210 0.84 -0.8 42,903 - PS417_00210 0.84 -0.1 42,903 - PS417_00210 0.84 -1.1 42,934 + PS417_00210 0.88 +0.2 43,039 - -0.9 43,059 - -0.1 43,059 - +0.2 43,143 + -0.1 43,144 - +0.4 43,146 - -0.3 43,276 - -1.3 43,281 + +0.2 43,281 + -0.6 43,338 + PS417_00215 0.14 +1.4 43,339 - PS417_00215 0.15 -0.0 43,339 - PS417_00215 0.15 -0.7 43,361 + PS417_00215 0.20 -0.1 43,362 - PS417_00215 0.20 +0.3 43,526 + PS417_00215 0.58 -0.1 43,526 + PS417_00215 0.58 +0.1 43,527 - PS417_00215 0.58 -0.4 43,665 - +0.2 43,700 + -0.1 43,700 + -1.1 43,701 - +0.5 43,716 + -2.5 43,717 - +0.1 43,841 + +2.7 43,841 + -1.9 43,841 + +0.7 43,841 + +1.4 43,841 + +0.4 43,842 - -0.7 43,845 + +1.1 43,846 - +1.1 43,852 + +0.7 43,885 + +2.1 43,885 + +0.6 43,885 + +1.1 43,885 + -0.2 43,886 - +0.3 43,886 - -0.0 43,887 + -0.7 43,892 + -1.5 43,893 - +0.5 43,893 - +0.6 43,902 - -0.2 43,977 + PS417_00220 0.14 -1.2
Or see this region's nucleotide sequence